Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28920 and AZOBR_RS28925 overlap by 4 nucleotides AZOBR_RS28925 and AZOBR_RS28930 are separated by 92 nucleotides AZOBR_RS28930 and AZOBR_RS28935 overlap by 63 nucleotides AZOBR_RS28935 and AZOBR_RS28940 are separated by 146 nucleotides AZOBR_RS28940 and AZOBR_RS28945 overlap by 1 nucleotides AZOBR_RS28945 and AZOBR_RS28950 overlap by 4 nucleotides AZOBR_RS28950 and AZOBR_RS28955 overlap by 1 nucleotides
AZOBR_RS28920: AZOBR_RS28920 - transcriptional regulator XRE family (fragment), at 637,378 to 637,629
_RS28920
AZOBR_RS28925: AZOBR_RS28925 - hypothetical protein, at 637,626 to 637,874
_RS28925
AZOBR_RS28930: AZOBR_RS28930 - hypothetical protein, at 637,967 to 638,158
_RS28930
AZOBR_RS28935: AZOBR_RS28935 - hypothetical protein, at 638,096 to 638,305
_RS28935
AZOBR_RS28940: AZOBR_RS28940 - DNA polymerase III subunit beta, at 638,452 to 639,681
_RS28940
AZOBR_RS28945: AZOBR_RS28945 - hypothetical protein, at 639,681 to 640,043
_RS28945
AZOBR_RS28950: AZOBR_RS28950 - exported protein of unknown function, at 640,040 to 640,465
_RS28950
AZOBR_RS28955: AZOBR_RS28955 - hypothetical protein, at 640,465 to 640,749
_RS28955
Position (kb) 638
639
640 Strain fitness (log2 ratio) -1
0
1 at 637.654 kb on + strand, within AZOBR_RS28925 at 637.855 kb on - strand at 638.196 kb on + strand, within AZOBR_RS28935 at 638.612 kb on + strand, within AZOBR_RS28940 at 638.613 kb on - strand, within AZOBR_RS28940 at 638.613 kb on - strand, within AZOBR_RS28940 at 638.847 kb on - strand, within AZOBR_RS28940 at 638.847 kb on - strand, within AZOBR_RS28940 at 638.856 kb on - strand, within AZOBR_RS28940 at 639.164 kb on + strand at 639.164 kb on + strand, within AZOBR_RS28940 at 639.165 kb on - strand, within AZOBR_RS28940 at 639.165 kb on - strand, within AZOBR_RS28940 at 639.583 kb on + strand at 639.893 kb on + strand, within AZOBR_RS28945 at 639.894 kb on - strand, within AZOBR_RS28945 at 640.640 kb on + strand, within AZOBR_RS28955 at 640.640 kb on + strand, within AZOBR_RS28955 at 640.640 kb on + strand, within AZOBR_RS28955 at 640.641 kb on - strand, within AZOBR_RS28955
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days remove 637,654 + AZOBR_RS28925 0.11 +0.7 637,855 - -0.2 638,196 + AZOBR_RS28935 0.48 -1.3 638,612 + AZOBR_RS28940 0.13 -0.8 638,613 - AZOBR_RS28940 0.13 -0.7 638,613 - AZOBR_RS28940 0.13 -0.7 638,847 - AZOBR_RS28940 0.32 -0.7 638,847 - AZOBR_RS28940 0.32 +0.6 638,856 - AZOBR_RS28940 0.33 -0.0 639,164 + +1.0 639,164 + AZOBR_RS28940 0.58 +0.3 639,165 - AZOBR_RS28940 0.58 +0.3 639,165 - AZOBR_RS28940 0.58 -0.6 639,583 + +0.4 639,893 + AZOBR_RS28945 0.58 +0.5 639,894 - AZOBR_RS28945 0.59 +1.5 640,640 + AZOBR_RS28955 0.61 +0.5 640,640 + AZOBR_RS28955 0.61 +0.2 640,640 + AZOBR_RS28955 0.61 -1.3 640,641 - AZOBR_RS28955 0.62 +0.4
Or see this region's nucleotide sequence