Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25675

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25670 and AZOBR_RS25675 are separated by 12 nucleotidesAZOBR_RS25675 and AZOBR_RS25680 are separated by 129 nucleotides AZOBR_RS25670: AZOBR_RS25670 - long-chain fatty acid--CoA ligase, at 806,535 to 809,945 _RS25670 AZOBR_RS25675: AZOBR_RS25675 - O-methyltransferase, at 809,958 to 810,551 _RS25675 AZOBR_RS25680: AZOBR_RS25680 - hypothetical protein, at 810,681 to 811,502 _RS25680 Position (kb) 809 810 811Strain fitness (log2 ratio) -1 0 1at 809.122 kb on - strand, within AZOBR_RS25670at 809.163 kb on + strand, within AZOBR_RS25670at 809.304 kb on + strand, within AZOBR_RS25670at 809.305 kb on - strand, within AZOBR_RS25670at 809.340 kb on + strand, within AZOBR_RS25670at 809.508 kb on + strand, within AZOBR_RS25670at 809.509 kb on - strand, within AZOBR_RS25670at 809.509 kb on - strand, within AZOBR_RS25670at 809.893 kb on - strandat 810.044 kb on - strand, within AZOBR_RS25675at 810.502 kb on + strandat 810.503 kb on - strandat 810.503 kb on - strandat 810.503 kb on - strandat 810.503 kb on - strandat 810.743 kb on - strandat 810.743 kb on - strandat 810.751 kb on + strandat 810.802 kb on + strand, within AZOBR_RS25680at 810.802 kb on + strand, within AZOBR_RS25680at 811.283 kb on + strand, within AZOBR_RS25680at 811.283 kb on + strand, within AZOBR_RS25680at 811.284 kb on - strand, within AZOBR_RS25680at 811.284 kb on - strand, within AZOBR_RS25680at 811.321 kb on + strand, within AZOBR_RS25680at 811.321 kb on + strand, within AZOBR_RS25680at 811.322 kb on - strand, within AZOBR_RS25680

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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809,122 - AZOBR_RS25670 0.76 +0.6
809,163 + AZOBR_RS25670 0.77 +1.1
809,304 + AZOBR_RS25670 0.81 +0.8
809,305 - AZOBR_RS25670 0.81 +0.4
809,340 + AZOBR_RS25670 0.82 +1.4
809,508 + AZOBR_RS25670 0.87 +0.8
809,509 - AZOBR_RS25670 0.87 +1.1
809,509 - AZOBR_RS25670 0.87 +1.2
809,893 - +0.0
810,044 - AZOBR_RS25675 0.14 -1.1
810,502 + +1.0
810,503 - -0.2
810,503 - +0.2
810,503 - +0.8
810,503 - +0.5
810,743 - +0.4
810,743 - +0.0
810,751 + +0.6
810,802 + AZOBR_RS25680 0.15 +0.5
810,802 + AZOBR_RS25680 0.15 +0.8
811,283 + AZOBR_RS25680 0.73 -0.3
811,283 + AZOBR_RS25680 0.73 +0.8
811,284 - AZOBR_RS25680 0.73 +0.7
811,284 - AZOBR_RS25680 0.73 -0.2
811,321 + AZOBR_RS25680 0.78 +0.1
811,321 + AZOBR_RS25680 0.78 -1.7
811,322 - AZOBR_RS25680 0.78 +0.5

Or see this region's nucleotide sequence