Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24205

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS24200 and AZOBR_RS24205 are separated by 540 nucleotidesAZOBR_RS24205 and AZOBR_RS24210 are separated by 676 nucleotides AZOBR_RS24200: AZOBR_RS24200 - hypothetical protein, at 475,009 to 475,346 _RS24200 AZOBR_RS24205: AZOBR_RS24205 - hypothetical protein, at 475,887 to 477,047 _RS24205 AZOBR_RS24210: AZOBR_RS24210 - two-component response regulator, at 477,724 to 478,107 _RS24210 Position (kb) 475 476 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1at 475.352 kb on + strandat 475.387 kb on + strandat 475.387 kb on + strandat 475.420 kb on - strandat 475.535 kb on - strandat 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.145 kb on + strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.146 kb on - strand, within AZOBR_RS24205at 476.193 kb on + strand, within AZOBR_RS24205at 476.193 kb on + strand, within AZOBR_RS24205at 476.193 kb on + strand, within AZOBR_RS24205at 476.194 kb on - strand, within AZOBR_RS24205at 476.279 kb on + strand, within AZOBR_RS24205at 476.287 kb on + strand, within AZOBR_RS24205at 476.287 kb on + strand, within AZOBR_RS24205at 476.288 kb on - strand, within AZOBR_RS24205at 476.374 kb on - strand, within AZOBR_RS24205at 476.374 kb on - strand, within AZOBR_RS24205at 476.485 kb on + strand, within AZOBR_RS24205at 476.485 kb on + strand, within AZOBR_RS24205at 476.486 kb on - strand, within AZOBR_RS24205at 476.486 kb on - strand, within AZOBR_RS24205at 476.486 kb on - strand, within AZOBR_RS24205at 476.486 kb on - strand, within AZOBR_RS24205at 476.611 kb on - strand, within AZOBR_RS24205at 476.611 kb on - strand, within AZOBR_RS24205at 476.611 kb on - strand, within AZOBR_RS24205at 476.616 kb on + strand, within AZOBR_RS24205at 476.616 kb on + strand, within AZOBR_RS24205at 476.616 kb on + strand, within AZOBR_RS24205at 476.616 kb on + strand, within AZOBR_RS24205at 476.654 kb on + strand, within AZOBR_RS24205at 476.753 kb on + strand, within AZOBR_RS24205at 476.753 kb on + strand, within AZOBR_RS24205at 476.753 kb on + strand, within AZOBR_RS24205at 476.753 kb on + strand, within AZOBR_RS24205at 476.754 kb on - strand, within AZOBR_RS24205at 476.754 kb on - strand, within AZOBR_RS24205at 476.877 kb on + strand, within AZOBR_RS24205at 476.878 kb on - strand, within AZOBR_RS24205at 477.005 kb on - strandat 477.173 kb on + strandat 477.173 kb on + strandat 477.174 kb on - strandat 477.174 kb on - strandat 477.299 kb on + strandat 477.320 kb on + strandat 477.331 kb on + strandat 477.331 kb on + strandat 477.331 kb on + strandat 477.331 kb on + strandat 477.331 kb on + strandat 477.332 kb on - strandat 477.332 kb on - strandat 477.332 kb on - strandat 477.343 kb on + strandat 477.343 kb on + strandat 477.344 kb on - strandat 477.383 kb on + strandat 477.384 kb on - strandat 477.384 kb on - strandat 477.427 kb on + strandat 477.435 kb on + strandat 477.436 kb on - strandat 477.533 kb on + strandat 477.533 kb on + strandat 477.533 kb on + strandat 477.533 kb on + strandat 477.533 kb on + strandat 477.609 kb on + strandat 477.615 kb on - strandat 477.645 kb on + strandat 478.016 kb on + strand, within AZOBR_RS24210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
remove
475,352 + -0.0
475,387 + -2.2
475,387 + -0.7
475,420 - +0.0
475,535 - -0.6
476,145 + AZOBR_RS24205 0.22 +0.0
476,145 + AZOBR_RS24205 0.22 -2.7
476,145 + AZOBR_RS24205 0.22 -2.5
476,145 + AZOBR_RS24205 0.22 -0.3
476,145 + AZOBR_RS24205 0.22 -0.4
476,145 + AZOBR_RS24205 0.22 -0.4
476,145 + AZOBR_RS24205 0.22 -1.2
476,145 + AZOBR_RS24205 0.22 -0.9
476,145 + AZOBR_RS24205 0.22 -2.7
476,145 + AZOBR_RS24205 0.22 +0.0
476,145 + AZOBR_RS24205 0.22 +0.1
476,146 - AZOBR_RS24205 0.22 -1.3
476,146 - AZOBR_RS24205 0.22 -0.6
476,146 - AZOBR_RS24205 0.22 +0.1
476,146 - AZOBR_RS24205 0.22 -1.5
476,146 - AZOBR_RS24205 0.22 -2.1
476,146 - AZOBR_RS24205 0.22 -0.4
476,146 - AZOBR_RS24205 0.22 -0.2
476,146 - AZOBR_RS24205 0.22 -0.7
476,146 - AZOBR_RS24205 0.22 -3.2
476,193 + AZOBR_RS24205 0.26 -2.3
476,193 + AZOBR_RS24205 0.26 +0.5
476,193 + AZOBR_RS24205 0.26 -0.8
476,194 - AZOBR_RS24205 0.26 -2.0
476,279 + AZOBR_RS24205 0.34 -0.7
476,287 + AZOBR_RS24205 0.34 -0.7
476,287 + AZOBR_RS24205 0.34 -0.2
476,288 - AZOBR_RS24205 0.35 -0.5
476,374 - AZOBR_RS24205 0.42 +0.0
476,374 - AZOBR_RS24205 0.42 -0.2
476,485 + AZOBR_RS24205 0.52 -0.8
476,485 + AZOBR_RS24205 0.52 -2.9
476,486 - AZOBR_RS24205 0.52 -0.6
476,486 - AZOBR_RS24205 0.52 -0.3
476,486 - AZOBR_RS24205 0.52 -3.5
476,486 - AZOBR_RS24205 0.52 -0.4
476,611 - AZOBR_RS24205 0.62 -2.1
476,611 - AZOBR_RS24205 0.62 +0.0
476,611 - AZOBR_RS24205 0.62 -0.4
476,616 + AZOBR_RS24205 0.63 +0.3
476,616 + AZOBR_RS24205 0.63 +0.2
476,616 + AZOBR_RS24205 0.63 -0.8
476,616 + AZOBR_RS24205 0.63 -0.7
476,654 + AZOBR_RS24205 0.66 -0.6
476,753 + AZOBR_RS24205 0.75 -1.0
476,753 + AZOBR_RS24205 0.75 -0.1
476,753 + AZOBR_RS24205 0.75 -0.7
476,753 + AZOBR_RS24205 0.75 -0.0
476,754 - AZOBR_RS24205 0.75 -0.0
476,754 - AZOBR_RS24205 0.75 -0.4
476,877 + AZOBR_RS24205 0.85 -0.6
476,878 - AZOBR_RS24205 0.85 -0.6
477,005 - -0.3
477,173 + -1.2
477,173 + -0.3
477,174 - -0.4
477,174 - -0.2
477,299 + +1.3
477,320 + +0.4
477,331 + -0.6
477,331 + -1.4
477,331 + +0.3
477,331 + +0.1
477,331 + +0.9
477,332 - -0.3
477,332 - -1.2
477,332 - +0.8
477,343 + -0.7
477,343 + -1.3
477,344 - -0.0
477,383 + -1.3
477,384 - +0.8
477,384 - +0.0
477,427 + -0.4
477,435 + +0.9
477,436 - +0.1
477,533 + +0.1
477,533 + -3.7
477,533 + +0.0
477,533 + +0.5
477,533 + -0.6
477,609 + -1.0
477,615 - -0.0
477,645 + -0.4
478,016 + AZOBR_RS24210 0.76 +0.2

Or see this region's nucleotide sequence