Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22765

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS22755 and AZOBR_RS22760 are separated by 87 nucleotidesAZOBR_RS22760 and AZOBR_RS22765 are separated by 17 nucleotidesAZOBR_RS22765 and AZOBR_RS22770 overlap by 4 nucleotidesAZOBR_RS22770 and AZOBR_RS22775 are separated by 3 nucleotides AZOBR_RS22755: AZOBR_RS22755 - dihydropyrimidinase, at 115,329 to 116,765 _RS22755 AZOBR_RS22760: AZOBR_RS22760 - Asp/Glu/hydantoin racemase, at 116,853 to 117,584 _RS22760 AZOBR_RS22765: AZOBR_RS22765 - hydrolase, at 117,602 to 118,933 _RS22765 AZOBR_RS22770: AZOBR_RS22770 - ABC transporter ATP-binding protein, at 118,930 to 119,712 _RS22770 AZOBR_RS22775: AZOBR_RS22775 - ABC transporter permease, at 119,716 to 120,522 _RS22775 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 116.845 kb on + strandat 116.845 kb on + strandat 117.163 kb on + strand, within AZOBR_RS22760at 117.164 kb on - strand, within AZOBR_RS22760at 117.164 kb on - strand, within AZOBR_RS22760at 117.199 kb on + strand, within AZOBR_RS22760at 117.199 kb on + strand, within AZOBR_RS22760at 117.200 kb on - strand, within AZOBR_RS22760at 117.458 kb on - strand, within AZOBR_RS22760at 117.584 kb on + strandat 117.585 kb on - strandat 118.137 kb on + strand, within AZOBR_RS22765at 118.137 kb on + strand, within AZOBR_RS22765at 118.137 kb on + strand, within AZOBR_RS22765at 118.137 kb on + strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.138 kb on - strand, within AZOBR_RS22765at 118.668 kb on + strand, within AZOBR_RS22765at 119.354 kb on + strand, within AZOBR_RS22770at 119.354 kb on + strand, within AZOBR_RS22770at 119.354 kb on + strand, within AZOBR_RS22770at 119.354 kb on + strand, within AZOBR_RS22770at 119.355 kb on - strand, within AZOBR_RS22770at 119.355 kb on - strand, within AZOBR_RS22770at 119.355 kb on - strand, within AZOBR_RS22770at 119.355 kb on - strand, within AZOBR_RS22770at 119.355 kb on - strand, within AZOBR_RS22770at 119.847 kb on - strand, within AZOBR_RS22775at 119.858 kb on + strand, within AZOBR_RS22775at 119.858 kb on + strand, within AZOBR_RS22775at 119.859 kb on - strand, within AZOBR_RS22775at 119.859 kb on - strand, within AZOBR_RS22775at 119.859 kb on - strand, within AZOBR_RS22775at 119.861 kb on + strand, within AZOBR_RS22775at 119.861 kb on + strand, within AZOBR_RS22775at 119.861 kb on + strand, within AZOBR_RS22775at 119.861 kb on + strand, within AZOBR_RS22775at 119.862 kb on - strand, within AZOBR_RS22775at 119.862 kb on - strand, within AZOBR_RS22775at 119.862 kb on - strand, within AZOBR_RS22775at 119.862 kb on - strand, within AZOBR_RS22775at 119.880 kb on - strand, within AZOBR_RS22775at 119.880 kb on - strand, within AZOBR_RS22775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
remove
116,845 + -0.1
116,845 + -0.7
117,163 + AZOBR_RS22760 0.42 -0.3
117,164 - AZOBR_RS22760 0.42 -2.4
117,164 - AZOBR_RS22760 0.42 -0.5
117,199 + AZOBR_RS22760 0.47 -0.2
117,199 + AZOBR_RS22760 0.47 -0.1
117,200 - AZOBR_RS22760 0.47 -0.0
117,458 - AZOBR_RS22760 0.83 -1.1
117,584 + +2.9
117,585 - +0.1
118,137 + AZOBR_RS22765 0.40 +0.1
118,137 + AZOBR_RS22765 0.40 +0.8
118,137 + AZOBR_RS22765 0.40 -0.7
118,137 + AZOBR_RS22765 0.40 +0.1
118,138 - AZOBR_RS22765 0.40 -0.2
118,138 - AZOBR_RS22765 0.40 +1.4
118,138 - AZOBR_RS22765 0.40 -0.4
118,138 - AZOBR_RS22765 0.40 +1.1
118,138 - AZOBR_RS22765 0.40 +0.6
118,668 + AZOBR_RS22765 0.80 +0.8
119,354 + AZOBR_RS22770 0.54 +0.7
119,354 + AZOBR_RS22770 0.54 -1.6
119,354 + AZOBR_RS22770 0.54 -0.3
119,354 + AZOBR_RS22770 0.54 +0.8
119,355 - AZOBR_RS22770 0.54 +1.2
119,355 - AZOBR_RS22770 0.54 -0.4
119,355 - AZOBR_RS22770 0.54 -0.5
119,355 - AZOBR_RS22770 0.54 -0.1
119,355 - AZOBR_RS22770 0.54 -0.9
119,847 - AZOBR_RS22775 0.16 -1.3
119,858 + AZOBR_RS22775 0.18 -0.6
119,858 + AZOBR_RS22775 0.18 +0.5
119,859 - AZOBR_RS22775 0.18 +0.6
119,859 - AZOBR_RS22775 0.18 +0.9
119,859 - AZOBR_RS22775 0.18 +0.5
119,861 + AZOBR_RS22775 0.18 +0.3
119,861 + AZOBR_RS22775 0.18 +0.3
119,861 + AZOBR_RS22775 0.18 +0.7
119,861 + AZOBR_RS22775 0.18 +0.6
119,862 - AZOBR_RS22775 0.18 -0.9
119,862 - AZOBR_RS22775 0.18 -1.2
119,862 - AZOBR_RS22775 0.18 +0.8
119,862 - AZOBR_RS22775 0.18 +0.3
119,880 - AZOBR_RS22775 0.20 -0.4
119,880 - AZOBR_RS22775 0.20 +0.4

Or see this region's nucleotide sequence