Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22740

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22730 and AZOBR_RS22740 are separated by 962 nucleotidesAZOBR_RS22740 and AZOBR_RS22745 are separated by 280 nucleotides AZOBR_RS22730: AZOBR_RS22730 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 108,419 to 109,069 _RS22730 AZOBR_RS22740: AZOBR_RS22740 - transcriptional regulator, at 110,032 to 110,871 _RS22740 AZOBR_RS22745: AZOBR_RS22745 - ATPase AAA, at 111,152 to 113,818 _RS22745 Position (kb) 110 111Strain fitness (log2 ratio) -2 -1 0 1at 109.193 kb on + strandat 109.310 kb on + strandat 109.311 kb on - strandat 109.311 kb on - strandat 109.530 kb on + strandat 109.530 kb on + strandat 109.530 kb on + strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.699 kb on - strandat 109.798 kb on - strandat 110.144 kb on + strand, within AZOBR_RS22740at 110.144 kb on + strand, within AZOBR_RS22740at 110.144 kb on + strand, within AZOBR_RS22740at 110.270 kb on + strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.358 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.653 kb on + strand, within AZOBR_RS22740at 110.654 kb on - strand, within AZOBR_RS22740at 110.871 kb on + strandat 110.872 kb on - strandat 110.907 kb on + strandat 110.926 kb on - strandat 111.134 kb on + strandat 111.644 kb on + strand, within AZOBR_RS22745at 111.645 kb on - strand, within AZOBR_RS22745

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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109,193 + +0.5
109,310 + -0.4
109,311 - +0.4
109,311 - +1.0
109,530 + +0.1
109,530 + -2.1
109,530 + +0.1
109,531 - +0.7
109,531 - +0.1
109,531 - +0.3
109,531 - -0.9
109,531 - +0.7
109,531 - -0.2
109,531 - +1.1
109,699 - +0.1
109,798 - +0.0
110,144 + AZOBR_RS22740 0.13 +0.1
110,144 + AZOBR_RS22740 0.13 -0.9
110,144 + AZOBR_RS22740 0.13 +0.2
110,270 + AZOBR_RS22740 0.28 +1.1
110,271 - AZOBR_RS22740 0.28 +0.0
110,271 - AZOBR_RS22740 0.28 -0.3
110,271 - AZOBR_RS22740 0.28 +0.6
110,358 - AZOBR_RS22740 0.39 +1.0
110,649 - AZOBR_RS22740 0.73 +0.3
110,649 - AZOBR_RS22740 0.73 -0.3
110,649 - AZOBR_RS22740 0.73 +0.7
110,653 + AZOBR_RS22740 0.74 -0.1
110,654 - AZOBR_RS22740 0.74 -1.5
110,871 + -0.0
110,872 - -0.1
110,907 + +0.0
110,926 - -0.3
111,134 + +0.3
111,644 + AZOBR_RS22745 0.18 +0.6
111,645 - AZOBR_RS22745 0.18 +1.3

Or see this region's nucleotide sequence