Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21565

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21565 and AZOBR_RS21570 are separated by 90 nucleotides AZOBR_RS21565: AZOBR_RS21565 - hypothetical protein, at 1,614,656 to 1,616,038 _RS21565 AZOBR_RS21570: AZOBR_RS21570 - N-acetylneuraminate synthase, at 1,616,129 to 1,617,181 _RS21570 Position (kb) 1614 1615 1616 1617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1613.893 kb on - strandat 1614.705 kb on - strandat 1614.710 kb on + strandat 1614.728 kb on + strandat 1614.773 kb on + strandat 1614.773 kb on + strandat 1614.773 kb on + strandat 1614.773 kb on + strandat 1614.773 kb on + strandat 1614.773 kb on + strandat 1614.774 kb on - strandat 1614.779 kb on + strandat 1614.780 kb on - strandat 1615.133 kb on + strand, within AZOBR_RS21565at 1615.133 kb on + strand, within AZOBR_RS21565at 1615.134 kb on - strand, within AZOBR_RS21565at 1615.134 kb on - strand, within AZOBR_RS21565at 1615.730 kb on + strand, within AZOBR_RS21565at 1615.790 kb on + strand, within AZOBR_RS21565at 1615.790 kb on + strand, within AZOBR_RS21565at 1615.887 kb on - strand, within AZOBR_RS21565at 1616.010 kb on - strandat 1616.291 kb on + strand, within AZOBR_RS21570at 1616.291 kb on + strand, within AZOBR_RS21570at 1617.002 kb on + strand, within AZOBR_RS21570at 1617.003 kb on - strand, within AZOBR_RS21570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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1,613,893 - +0.4
1,614,705 - -1.0
1,614,710 + -0.2
1,614,728 + +0.6
1,614,773 + -1.4
1,614,773 + -2.2
1,614,773 + -0.9
1,614,773 + +0.5
1,614,773 + +0.1
1,614,773 + -1.1
1,614,774 - -0.9
1,614,779 + -1.7
1,614,780 - -0.6
1,615,133 + AZOBR_RS21565 0.34 +0.1
1,615,133 + AZOBR_RS21565 0.34 -0.3
1,615,134 - AZOBR_RS21565 0.35 +0.4
1,615,134 - AZOBR_RS21565 0.35 -3.1
1,615,730 + AZOBR_RS21565 0.78 -0.3
1,615,790 + AZOBR_RS21565 0.82 +0.5
1,615,790 + AZOBR_RS21565 0.82 +0.1
1,615,887 - AZOBR_RS21565 0.89 -0.9
1,616,010 - +0.7
1,616,291 + AZOBR_RS21570 0.15 -4.3
1,616,291 + AZOBR_RS21570 0.15 -3.7
1,617,002 + AZOBR_RS21570 0.83 -0.7
1,617,003 - AZOBR_RS21570 0.83 -2.1

Or see this region's nucleotide sequence