Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17005 and AZOBR_RS17010 overlap by 60 nucleotides AZOBR_RS17010 and AZOBR_RS17015 are separated by 169 nucleotides AZOBR_RS17015 and AZOBR_RS17020 are separated by 9 nucleotides AZOBR_RS17020 and AZOBR_RS17025 are separated by 24 nucleotides
AZOBR_RS17005: AZOBR_RS17005 - radical SAM protein, at 570,770 to 571,897
_RS17005
AZOBR_RS17010: AZOBR_RS17010 - hypothetical protein, at 571,838 to 572,107
_RS17010
AZOBR_RS17015: AZOBR_RS17015 - hypothetical protein, at 572,277 to 572,663
_RS17015
AZOBR_RS17020: AZOBR_RS17020 - hypothetical protein, at 572,673 to 573,068
_RS17020
AZOBR_RS17025: AZOBR_RS17025 - squalene--hopene cyclase, at 573,093 to 575,024
_RS17025
Position (kb) 572
573
574 Strain fitness (log2 ratio) -1
0
1
2 at 572.432 kb on - strand, within AZOBR_RS17015 at 572.857 kb on + strand, within AZOBR_RS17020 at 572.858 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 573.157 kb on + strand at 573.158 kb on - strand at 573.166 kb on + strand at 573.167 kb on - strand at 573.244 kb on + strand at 573.244 kb on + strand at 573.244 kb on + strand at 573.502 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.509 kb on - strand, within AZOBR_RS17025 at 573.877 kb on + strand, within AZOBR_RS17025 at 573.878 kb on - strand, within AZOBR_RS17025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days remove 572,432 - AZOBR_RS17015 0.40 -1.1 572,857 + AZOBR_RS17020 0.46 -1.3 572,858 - AZOBR_RS17020 0.47 +1.1 572,873 - AZOBR_RS17020 0.51 -0.4 572,873 - AZOBR_RS17020 0.51 +0.8 572,873 - AZOBR_RS17020 0.51 +0.6 573,157 + -0.5 573,158 - +0.8 573,166 + +1.7 573,167 - +0.6 573,244 + +1.1 573,244 + +0.1 573,244 + -0.2 573,502 + AZOBR_RS17025 0.21 -0.4 573,508 + AZOBR_RS17025 0.21 +0.7 573,508 + AZOBR_RS17025 0.21 +0.5 573,508 + AZOBR_RS17025 0.21 -1.1 573,508 + AZOBR_RS17025 0.21 +0.0 573,509 - AZOBR_RS17025 0.22 +1.3 573,877 + AZOBR_RS17025 0.41 -0.4 573,878 - AZOBR_RS17025 0.41 +1.8
Or see this region's nucleotide sequence