Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15030

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15025 and AZOBR_RS15030 are separated by 47 nucleotidesAZOBR_RS15030 and AZOBR_RS15035 are separated by 27 nucleotides AZOBR_RS15025: AZOBR_RS15025 - hypothetical protein, at 144,938 to 145,915 _RS15025 AZOBR_RS15030: AZOBR_RS15030 - membrane protein, at 145,963 to 146,925 _RS15030 AZOBR_RS15035: AZOBR_RS15035 - membrane protein, at 146,953 to 147,912 _RS15035 Position (kb) 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1at 145.504 kb on + strand, within AZOBR_RS15025at 146.098 kb on + strand, within AZOBR_RS15030at 146.099 kb on - strand, within AZOBR_RS15030at 146.340 kb on + strand, within AZOBR_RS15030at 146.341 kb on - strand, within AZOBR_RS15030at 146.341 kb on - strand, within AZOBR_RS15030at 146.382 kb on - strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.512 kb on + strand, within AZOBR_RS15030at 146.513 kb on - strand, within AZOBR_RS15030at 146.513 kb on - strand, within AZOBR_RS15030at 146.513 kb on - strand, within AZOBR_RS15030at 146.513 kb on - strand, within AZOBR_RS15030at 146.513 kb on - strand, within AZOBR_RS15030at 146.513 kb on - strand, within AZOBR_RS15030at 146.653 kb on + strand, within AZOBR_RS15030at 146.653 kb on + strand, within AZOBR_RS15030at 146.653 kb on + strand, within AZOBR_RS15030at 146.653 kb on + strandat 146.654 kb on - strand, within AZOBR_RS15030at 146.987 kb on + strandat 146.987 kb on + strandat 146.987 kb on + strandat 146.987 kb on + strandat 146.987 kb on + strandat 146.988 kb on - strandat 146.988 kb on - strandat 146.988 kb on - strandat 146.988 kb on - strandat 146.988 kb on - strandat 146.988 kb on - strandat 146.988 kb on - strandat 147.099 kb on - strand, within AZOBR_RS15035at 147.152 kb on + strand, within AZOBR_RS15035at 147.152 kb on + strand, within AZOBR_RS15035at 147.164 kb on + strand, within AZOBR_RS15035at 147.165 kb on - strand, within AZOBR_RS15035at 147.185 kb on + strandat 147.285 kb on - strand, within AZOBR_RS15035at 147.290 kb on + strand, within AZOBR_RS15035at 147.513 kb on - strand, within AZOBR_RS15035at 147.732 kb on - strand, within AZOBR_RS15035at 147.779 kb on + strand, within AZOBR_RS15035at 147.779 kb on + strand, within AZOBR_RS15035at 147.780 kb on - strand, within AZOBR_RS15035at 147.780 kb on - strand, within AZOBR_RS15035at 147.780 kb on - strand, within AZOBR_RS15035at 147.782 kb on + strand, within AZOBR_RS15035at 147.782 kb on + strand, within AZOBR_RS15035at 147.783 kb on - strand, within AZOBR_RS15035

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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145,504 + AZOBR_RS15025 0.58 -0.3
146,098 + AZOBR_RS15030 0.14 +0.1
146,099 - AZOBR_RS15030 0.14 -0.0
146,340 + AZOBR_RS15030 0.39 -0.6
146,341 - AZOBR_RS15030 0.39 +0.3
146,341 - AZOBR_RS15030 0.39 -1.3
146,382 - AZOBR_RS15030 0.44 -0.1
146,512 + AZOBR_RS15030 0.57 -0.8
146,512 + AZOBR_RS15030 0.57 -1.0
146,512 + AZOBR_RS15030 0.57 -2.1
146,512 + AZOBR_RS15030 0.57 -0.6
146,512 + AZOBR_RS15030 0.57 -1.1
146,512 + AZOBR_RS15030 0.57 -0.8
146,512 + AZOBR_RS15030 0.57 +0.2
146,512 + AZOBR_RS15030 0.57 +0.7
146,512 + AZOBR_RS15030 0.57 -1.2
146,513 - AZOBR_RS15030 0.57 +0.0
146,513 - AZOBR_RS15030 0.57 -1.8
146,513 - AZOBR_RS15030 0.57 +0.4
146,513 - AZOBR_RS15030 0.57 +0.6
146,513 - AZOBR_RS15030 0.57 +0.2
146,513 - AZOBR_RS15030 0.57 -0.7
146,653 + AZOBR_RS15030 0.72 -0.5
146,653 + AZOBR_RS15030 0.72 -0.3
146,653 + AZOBR_RS15030 0.72 +0.6
146,653 + +0.3
146,654 - AZOBR_RS15030 0.72 +0.2
146,987 + +0.4
146,987 + +0.9
146,987 + +0.2
146,987 + -0.8
146,987 + -0.6
146,988 - +0.1
146,988 - +0.5
146,988 - +0.4
146,988 - -0.1
146,988 - +0.7
146,988 - -1.2
146,988 - +0.5
147,099 - AZOBR_RS15035 0.15 +0.1
147,152 + AZOBR_RS15035 0.21 -0.8
147,152 + AZOBR_RS15035 0.21 -1.1
147,164 + AZOBR_RS15035 0.22 -0.7
147,165 - AZOBR_RS15035 0.22 -0.3
147,185 + -0.6
147,285 - AZOBR_RS15035 0.35 +0.1
147,290 + AZOBR_RS15035 0.35 -0.7
147,513 - AZOBR_RS15035 0.58 +0.7
147,732 - AZOBR_RS15035 0.81 -2.8
147,779 + AZOBR_RS15035 0.86 -0.5
147,779 + AZOBR_RS15035 0.86 +0.0
147,780 - AZOBR_RS15035 0.86 -0.6
147,780 - AZOBR_RS15035 0.86 -0.3
147,780 - AZOBR_RS15035 0.86 -0.1
147,782 + AZOBR_RS15035 0.86 -0.0
147,782 + AZOBR_RS15035 0.86 -0.3
147,783 - AZOBR_RS15035 0.86 -0.2

Or see this region's nucleotide sequence