Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25885

Experiment: D-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_25880 and AO353_25885 are separated by 129 nucleotidesAO353_25885 and AO353_25890 are separated by 10 nucleotidesAO353_25890 and AO353_25895 are separated by 35 nucleotides AO353_25880: AO353_25880 - sugar ABC transporter substrate-binding protein, at 5,707,204 to 5,708,514 _25880 AO353_25885: AO353_25885 - sugar ABC transporter permease, at 5,708,644 to 5,709,570 _25885 AO353_25890: AO353_25890 - sugar ABC transporter permease, at 5,709,581 to 5,710,411 _25890 AO353_25895: AO353_25895 - ABC transporter ATP-binding protein, at 5,710,447 to 5,711,550 _25895 Position (kb) 5708 5709 5710Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5707.736 kb on - strand, within AO353_25880at 5707.740 kb on + strand, within AO353_25880at 5707.741 kb on - strand, within AO353_25880at 5707.741 kb on - strand, within AO353_25880at 5707.741 kb on - strand, within AO353_25880at 5707.741 kb on - strand, within AO353_25880at 5707.883 kb on - strand, within AO353_25880at 5708.056 kb on + strand, within AO353_25880at 5708.056 kb on + strand, within AO353_25880at 5708.057 kb on - strand, within AO353_25880at 5708.057 kb on - strand, within AO353_25880at 5708.098 kb on + strand, within AO353_25880at 5708.098 kb on + strand, within AO353_25880at 5708.098 kb on + strand, within AO353_25880at 5708.098 kb on + strand, within AO353_25880at 5708.098 kb on + strandat 5708.099 kb on - strand, within AO353_25880at 5708.099 kb on - strand, within AO353_25880at 5708.099 kb on - strand, within AO353_25880at 5708.183 kb on - strand, within AO353_25880at 5708.183 kb on - strand, within AO353_25880at 5708.183 kb on - strand, within AO353_25880at 5708.248 kb on + strand, within AO353_25880at 5708.249 kb on - strand, within AO353_25880at 5708.260 kb on + strand, within AO353_25880at 5708.260 kb on + strand, within AO353_25880at 5708.260 kb on + strand, within AO353_25880at 5708.260 kb on + strand, within AO353_25880at 5708.260 kb on + strand, within AO353_25880at 5708.261 kb on - strandat 5708.261 kb on - strand, within AO353_25880at 5708.261 kb on - strand, within AO353_25880at 5708.347 kb on + strand, within AO353_25880at 5708.347 kb on + strand, within AO353_25880at 5708.347 kb on + strand, within AO353_25880at 5708.348 kb on - strand, within AO353_25880at 5708.348 kb on - strand, within AO353_25880at 5708.512 kb on + strandat 5708.512 kb on + strandat 5708.512 kb on + strandat 5708.512 kb on + strandat 5708.513 kb on - strandat 5708.513 kb on - strandat 5708.513 kb on - strandat 5708.513 kb on - strandat 5708.515 kb on + strandat 5708.515 kb on + strandat 5708.516 kb on - strandat 5708.528 kb on - strandat 5708.611 kb on + strandat 5708.611 kb on + strandat 5708.612 kb on - strandat 5708.649 kb on + strandat 5708.649 kb on + strandat 5708.649 kb on + strandat 5708.649 kb on + strandat 5708.650 kb on - strandat 5708.650 kb on - strandat 5708.650 kb on - strandat 5708.650 kb on - strandat 5708.650 kb on - strandat 5708.650 kb on - strandat 5708.695 kb on - strandat 5708.788 kb on + strand, within AO353_25885at 5708.861 kb on - strand, within AO353_25885at 5708.861 kb on - strand, within AO353_25885at 5708.861 kb on - strandat 5708.861 kb on - strand, within AO353_25885at 5708.901 kb on + strand, within AO353_25885at 5708.901 kb on + strand, within AO353_25885at 5708.902 kb on - strand, within AO353_25885at 5709.439 kb on + strand, within AO353_25885at 5709.439 kb on + strand, within AO353_25885at 5709.439 kb on + strand, within AO353_25885at 5709.440 kb on - strand, within AO353_25885at 5709.440 kb on - strand, within AO353_25885at 5709.440 kb on - strand, within AO353_25885at 5709.440 kb on - strand, within AO353_25885at 5709.561 kb on + strandat 5709.562 kb on - strandat 5709.747 kb on + strand, within AO353_25890at 5709.747 kb on + strand, within AO353_25890at 5709.755 kb on + strand, within AO353_25890at 5709.755 kb on + strand, within AO353_25890at 5709.756 kb on - strand, within AO353_25890at 5709.756 kb on - strand, within AO353_25890at 5709.756 kb on - strand, within AO353_25890at 5709.756 kb on - strand, within AO353_25890at 5709.756 kb on - strand, within AO353_25890at 5709.756 kb on - strand, within AO353_25890at 5709.863 kb on + strand, within AO353_25890at 5709.878 kb on + strand, within AO353_25890at 5709.879 kb on - strandat 5709.879 kb on - strand, within AO353_25890at 5710.019 kb on + strand, within AO353_25890at 5710.019 kb on + strand, within AO353_25890at 5710.019 kb on + strand, within AO353_25890at 5710.019 kb on + strand, within AO353_25890at 5710.019 kb on + strand, within AO353_25890at 5710.019 kb on + strandat 5710.020 kb on - strand, within AO353_25890at 5710.058 kb on + strand, within AO353_25890at 5710.058 kb on + strand, within AO353_25890at 5710.058 kb on + strand, within AO353_25890at 5710.058 kb on + strand, within AO353_25890at 5710.058 kb on + strand, within AO353_25890at 5710.059 kb on - strand, within AO353_25890at 5710.059 kb on - strand, within AO353_25890at 5710.064 kb on + strand, within AO353_25890at 5710.064 kb on + strand, within AO353_25890at 5710.064 kb on + strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.065 kb on - strand, within AO353_25890at 5710.277 kb on + strand, within AO353_25890at 5710.277 kb on + strand, within AO353_25890at 5710.278 kb on - strand, within AO353_25890at 5710.409 kb on + strandat 5710.410 kb on - strandat 5710.429 kb on + strandat 5710.430 kb on - strandat 5710.569 kb on + strand, within AO353_25895at 5710.570 kb on - strand, within AO353_25895at 5710.570 kb on - strand, within AO353_25895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
remove
5,707,736 - AO353_25880 0.41 +0.5
5,707,740 + AO353_25880 0.41 +0.3
5,707,741 - AO353_25880 0.41 +0.5
5,707,741 - AO353_25880 0.41 -2.1
5,707,741 - AO353_25880 0.41 -0.9
5,707,741 - AO353_25880 0.41 +1.3
5,707,883 - AO353_25880 0.52 -0.3
5,708,056 + AO353_25880 0.65 +0.5
5,708,056 + AO353_25880 0.65 -0.1
5,708,057 - AO353_25880 0.65 +0.4
5,708,057 - AO353_25880 0.65 -0.8
5,708,098 + AO353_25880 0.68 -1.0
5,708,098 + AO353_25880 0.68 -1.5
5,708,098 + AO353_25880 0.68 -1.7
5,708,098 + AO353_25880 0.68 +1.5
5,708,098 + +3.9
5,708,099 - AO353_25880 0.68 +1.3
5,708,099 - AO353_25880 0.68 -0.6
5,708,099 - AO353_25880 0.68 +0.4
5,708,183 - AO353_25880 0.75 +0.8
5,708,183 - AO353_25880 0.75 +1.0
5,708,183 - AO353_25880 0.75 -0.4
5,708,248 + AO353_25880 0.80 -0.0
5,708,249 - AO353_25880 0.80 -1.4
5,708,260 + AO353_25880 0.81 -1.2
5,708,260 + AO353_25880 0.81 -0.2
5,708,260 + AO353_25880 0.81 +0.1
5,708,260 + AO353_25880 0.81 -0.7
5,708,260 + AO353_25880 0.81 -0.5
5,708,261 - +0.3
5,708,261 - AO353_25880 0.81 -0.9
5,708,261 - AO353_25880 0.81 +1.0
5,708,347 + AO353_25880 0.87 +0.7
5,708,347 + AO353_25880 0.87 -0.7
5,708,347 + AO353_25880 0.87 -0.8
5,708,348 - AO353_25880 0.87 +1.3
5,708,348 - AO353_25880 0.87 -0.6
5,708,512 + -0.1
5,708,512 + -1.2
5,708,512 + -1.0
5,708,512 + +1.3
5,708,513 - -0.3
5,708,513 - -0.0
5,708,513 - -1.7
5,708,513 - +0.1
5,708,515 + -0.8
5,708,515 + -0.7
5,708,516 - -1.5
5,708,528 - -1.4
5,708,611 + +0.3
5,708,611 + -0.3
5,708,612 - +0.3
5,708,649 + -0.4
5,708,649 + +0.6
5,708,649 + +0.6
5,708,649 + -1.2
5,708,650 - -1.2
5,708,650 - -0.3
5,708,650 - -0.8
5,708,650 - +1.3
5,708,650 - +1.3
5,708,650 - -0.7
5,708,695 - -0.1
5,708,788 + AO353_25885 0.16 +0.7
5,708,861 - AO353_25885 0.23 -1.6
5,708,861 - AO353_25885 0.23 -0.5
5,708,861 - +1.0
5,708,861 - AO353_25885 0.23 -1.6
5,708,901 + AO353_25885 0.28 +1.3
5,708,901 + AO353_25885 0.28 -0.3
5,708,902 - AO353_25885 0.28 -1.2
5,709,439 + AO353_25885 0.86 +0.7
5,709,439 + AO353_25885 0.86 -0.3
5,709,439 + AO353_25885 0.86 -0.6
5,709,440 - AO353_25885 0.86 -0.8
5,709,440 - AO353_25885 0.86 -0.0
5,709,440 - AO353_25885 0.86 -0.8
5,709,440 - AO353_25885 0.86 -1.4
5,709,561 + +2.7
5,709,562 - -0.7
5,709,747 + AO353_25890 0.20 -0.5
5,709,747 + AO353_25890 0.20 +1.1
5,709,755 + AO353_25890 0.21 -0.7
5,709,755 + AO353_25890 0.21 -0.3
5,709,756 - AO353_25890 0.21 -1.2
5,709,756 - AO353_25890 0.21 +1.9
5,709,756 - AO353_25890 0.21 +0.3
5,709,756 - AO353_25890 0.21 +0.7
5,709,756 - AO353_25890 0.21 +0.3
5,709,756 - AO353_25890 0.21 -1.7
5,709,863 + AO353_25890 0.34 -0.0
5,709,878 + AO353_25890 0.36 -1.4
5,709,879 - +1.0
5,709,879 - AO353_25890 0.36 +0.4
5,710,019 + AO353_25890 0.53 -0.8
5,710,019 + AO353_25890 0.53 +0.7
5,710,019 + AO353_25890 0.53 -0.5
5,710,019 + AO353_25890 0.53 +0.1
5,710,019 + AO353_25890 0.53 -0.8
5,710,019 + +2.3
5,710,020 - AO353_25890 0.53 +0.1
5,710,058 + AO353_25890 0.57 +0.2
5,710,058 + AO353_25890 0.57 +1.3
5,710,058 + AO353_25890 0.57 +0.7
5,710,058 + AO353_25890 0.57 +1.0
5,710,058 + AO353_25890 0.57 +0.3
5,710,059 - AO353_25890 0.58 +1.3
5,710,059 - AO353_25890 0.58 +1.7
5,710,064 + AO353_25890 0.58 +0.1
5,710,064 + AO353_25890 0.58 -0.1
5,710,064 + AO353_25890 0.58 +0.7
5,710,065 - AO353_25890 0.58 -0.2
5,710,065 - AO353_25890 0.58 +1.3
5,710,065 - AO353_25890 0.58 +0.3
5,710,065 - AO353_25890 0.58 -0.9
5,710,065 - AO353_25890 0.58 -0.2
5,710,065 - AO353_25890 0.58 +0.2
5,710,065 - AO353_25890 0.58 -2.4
5,710,277 + AO353_25890 0.84 -1.8
5,710,277 + AO353_25890 0.84 -0.4
5,710,278 - AO353_25890 0.84 +0.7
5,710,409 + -1.5
5,710,410 - -1.9
5,710,429 + -0.7
5,710,430 - -0.2
5,710,569 + AO353_25895 0.11 -0.7
5,710,570 - AO353_25895 0.11 -1.0
5,710,570 - AO353_25895 0.11 +1.6

Or see this region's nucleotide sequence