Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02950 and AO353_02955 are separated by 19 nucleotides AO353_02955 and AO353_02960 are separated by 72 nucleotides AO353_02960 and AO353_02965 are separated by 107 nucleotides AO353_02965 and AO353_02970 are separated by 62 nucleotides AO353_02970 and AO353_02975 are separated by 183 nucleotides
AO353_02950: AO353_02950 - cell envelope protein SmpA, at 627,576 to 628,088
_02950
AO353_02955: AO353_02955 - tRNA-Arg, at 628,108 to 628,184
_02955
AO353_02960: AO353_02960 - tRNA-Arg, at 628,257 to 628,333
_02960
AO353_02965: AO353_02965 - tRNA-Ser, at 628,441 to 628,531
_02965
AO353_02970: AO353_02970 - carbon storage regulator, at 628,594 to 628,782
_02970
AO353_02975: AO353_02975 - aspartate kinase, at 628,966 to 630,207
_02975
Position (kb) 628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.628 kb on + strand, within AO353_02950 at 627.628 kb on + strand, within AO353_02950 at 627.628 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.766 kb on + strand, within AO353_02950 at 627.766 kb on + strand, within AO353_02950 at 627.766 kb on + strand, within AO353_02950 at 627.767 kb on - strand, within AO353_02950 at 627.767 kb on - strand, within AO353_02950 at 627.767 kb on - strand, within AO353_02950 at 627.803 kb on + strand, within AO353_02950 at 627.803 kb on + strand, within AO353_02950 at 627.804 kb on - strand, within AO353_02950 at 627.804 kb on - strand, within AO353_02950 at 627.950 kb on + strand, within AO353_02950 at 627.950 kb on + strand, within AO353_02950 at 627.950 kb on + strand, within AO353_02950 at 627.951 kb on - strand, within AO353_02950 at 627.951 kb on - strand, within AO353_02950 at 627.951 kb on - strand, within AO353_02950 at 627.990 kb on + strand, within AO353_02950 at 627.990 kb on + strand, within AO353_02950 at 627.991 kb on - strand, within AO353_02950 at 627.991 kb on - strand, within AO353_02950 at 627.997 kb on - strand, within AO353_02950 at 628.051 kb on + strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.159 kb on - strand, within AO353_02955 at 628.159 kb on - strand, within AO353_02955 at 628.229 kb on - strand at 628.229 kb on - strand at 628.229 kb on - strand at 628.229 kb on - strand at 628.229 kb on - strand at 628.238 kb on - strand at 628.254 kb on - strand at 628.390 kb on - strand at 628.421 kb on - strand at 628.428 kb on - strand at 628.431 kb on - strand at 628.439 kb on - strand at 628.638 kb on - strand, within AO353_02970 at 628.669 kb on - strand, within AO353_02970 at 628.669 kb on - strand, within AO353_02970 at 628.687 kb on - strand, within AO353_02970 at 628.743 kb on + strand, within AO353_02970 at 628.744 kb on - strand, within AO353_02970 at 628.744 kb on - strand, within AO353_02970 at 628.782 kb on + strand at 628.782 kb on + strand at 628.782 kb on + strand at 628.783 kb on - strand at 628.783 kb on - strand at 628.783 kb on - strand at 628.783 kb on - strand at 628.844 kb on + strand at 628.845 kb on - strand at 628.845 kb on - strand at 628.861 kb on + strand at 628.862 kb on - strand at 628.867 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.876 kb on - strand at 628.876 kb on - strand at 628.876 kb on - strand at 628.876 kb on - strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 629.479 kb on - strand, within AO353_02975 at 629.479 kb on - strand, within AO353_02975 at 629.479 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 627,628 + AO353_02950 0.10 -0.1 627,628 + AO353_02950 0.10 +0.5 627,628 + AO353_02950 0.10 +0.3 627,684 + AO353_02950 0.21 -0.8 627,684 + AO353_02950 0.21 +1.3 627,684 + AO353_02950 0.21 +0.4 627,684 + AO353_02950 0.21 -1.2 627,684 + AO353_02950 0.21 -1.1 627,684 + AO353_02950 0.21 -0.3 627,685 - AO353_02950 0.21 -0.6 627,685 - AO353_02950 0.21 -0.9 627,685 - AO353_02950 0.21 +0.0 627,685 - AO353_02950 0.21 -0.5 627,685 - AO353_02950 0.21 -0.9 627,735 + AO353_02950 0.31 +1.1 627,735 + AO353_02950 0.31 +0.5 627,735 + AO353_02950 0.31 +0.4 627,735 + AO353_02950 0.31 -1.1 627,735 + AO353_02950 0.31 +1.2 627,735 + AO353_02950 0.31 -2.0 627,735 + AO353_02950 0.31 +1.5 627,736 - AO353_02950 0.31 -0.7 627,736 - AO353_02950 0.31 -1.3 627,736 - AO353_02950 0.31 -1.0 627,736 - AO353_02950 0.31 -1.7 627,766 + AO353_02950 0.37 -0.3 627,766 + AO353_02950 0.37 -0.5 627,766 + AO353_02950 0.37 +0.9 627,767 - AO353_02950 0.37 -1.2 627,767 - AO353_02950 0.37 +0.3 627,767 - AO353_02950 0.37 -1.8 627,803 + AO353_02950 0.44 +1.4 627,803 + AO353_02950 0.44 +0.5 627,804 - AO353_02950 0.44 -0.2 627,804 - AO353_02950 0.44 -1.3 627,950 + AO353_02950 0.73 -1.3 627,950 + AO353_02950 0.73 -1.1 627,950 + AO353_02950 0.73 -0.9 627,951 - AO353_02950 0.73 +0.9 627,951 - AO353_02950 0.73 +1.5 627,951 - AO353_02950 0.73 +0.1 627,990 + AO353_02950 0.81 -0.8 627,990 + AO353_02950 0.81 -0.4 627,991 - AO353_02950 0.81 -1.2 627,991 - AO353_02950 0.81 +0.5 627,997 - AO353_02950 0.82 +0.2 628,051 + -0.7 628,052 - +0.5 628,052 - +0.6 628,052 - -0.3 628,052 - +0.4 628,052 - -1.5 628,052 - +0.5 628,159 - AO353_02955 0.66 -0.4 628,159 - AO353_02955 0.66 -0.8 628,229 - +0.8 628,229 - -0.5 628,229 - +0.0 628,229 - -0.6 628,229 - -0.3 628,238 - -0.1 628,254 - +0.6 628,390 - -0.9 628,421 - +0.2 628,428 - -0.2 628,431 - -0.9 628,439 - +1.0 628,638 - AO353_02970 0.23 +0.1 628,669 - AO353_02970 0.40 -1.9 628,669 - AO353_02970 0.40 -0.8 628,687 - AO353_02970 0.49 +0.3 628,743 + AO353_02970 0.79 -1.1 628,744 - AO353_02970 0.79 -0.7 628,744 - AO353_02970 0.79 -1.8 628,782 + -0.1 628,782 + -1.0 628,782 + -1.2 628,783 - +0.2 628,783 - -0.5 628,783 - -0.3 628,783 - -1.2 628,844 + +0.5 628,845 - -3.1 628,845 - -0.2 628,861 + -0.9 628,862 - +0.0 628,867 + +0.4 628,875 + -0.9 628,875 + +0.1 628,875 + +0.5 628,875 + +1.5 628,875 + -1.5 628,876 - +1.3 628,876 - -0.5 628,876 - -0.7 628,876 - -0.2 628,879 + -0.1 628,879 + +1.0 628,879 + -0.6 628,879 + -0.1 628,879 + -1.0 628,880 - +1.3 628,880 - +0.5 628,880 - +1.7 628,880 - +0.2 628,880 - -0.5 628,880 - -0.1 629,479 - AO353_02975 0.41 -1.9 629,479 - AO353_02975 0.41 -0.1 629,479 - AO353_02975 0.41 +0.9 629,482 - AO353_02975 0.42 -0.1 629,482 - AO353_02975 0.42 -0.3 629,482 - AO353_02975 0.42 +1.9 629,482 - AO353_02975 0.42 -2.5 629,482 - AO353_02975 0.42 -1.3 629,482 - AO353_02975 0.42 -1.0 629,482 - AO353_02975 0.42 -0.6
Or see this region's nucleotide sequence