Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00170 and AO353_00175 overlap by 4 nucleotides AO353_00175 and AO353_00180 are separated by 68 nucleotides AO353_00180 and AO353_00185 overlap by 1 nucleotides AO353_00185 and AO353_00190 are separated by 6 nucleotides AO353_00190 and AO353_00195 are separated by 11 nucleotides AO353_00195 and AO353_00200 overlap by 14 nucleotides
AO353_00170: AO353_00170 - lysozyme, at 34,524 to 35,051
_00170
AO353_00175: AO353_00175 - hypothetical protein, at 35,048 to 35,302
_00175
AO353_00180: AO353_00180 - conjugal transfer protein TraR, at 35,371 to 35,580
_00180
AO353_00185: AO353_00185 - phage tail protein, at 35,580 to 36,032
_00185
AO353_00190: AO353_00190 - phage tail protein, at 36,039 to 37,154
_00190
AO353_00195: AO353_00195 - virion morphogenesis protein, at 37,166 to 37,849
_00195
AO353_00200: AO353_00200 - phage tail protein, at 37,836 to 38,288
_00200
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1
2 at 35.379 kb on + strand at 35.614 kb on + strand at 35.659 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.850 kb on - strand, within AO353_00185 at 36.041 kb on - strand at 36.121 kb on + strand at 36.121 kb on + strand at 36.121 kb on + strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.210 kb on - strand, within AO353_00190 at 36.321 kb on + strand, within AO353_00190 at 36.321 kb on + strand, within AO353_00190 at 36.421 kb on + strand, within AO353_00190 at 36.443 kb on - strand, within AO353_00190 at 36.443 kb on - strand, within AO353_00190 at 36.586 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.756 kb on + strand, within AO353_00190 at 36.756 kb on + strand, within AO353_00190 at 36.757 kb on - strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.770 kb on - strand, within AO353_00190 at 36.804 kb on - strand, within AO353_00190 at 37.084 kb on + strand at 37.084 kb on + strand at 37.084 kb on + strand at 37.084 kb on + strand at 37.085 kb on - strand at 37.181 kb on + strand at 37.181 kb on + strand at 37.182 kb on - strand at 37.341 kb on + strand, within AO353_00195 at 37.341 kb on + strand, within AO353_00195 at 37.341 kb on + strand, within AO353_00195 at 37.342 kb on - strand, within AO353_00195 at 37.342 kb on - strand, within AO353_00195 at 37.772 kb on + strand, within AO353_00195 at 37.806 kb on - strand at 37.837 kb on + strand at 37.952 kb on - strand, within AO353_00200 at 38.124 kb on + strand, within AO353_00200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 35,379 + +0.2 35,614 + -0.7 35,659 + AO353_00185 0.17 +0.4 35,849 + AO353_00185 0.59 -0.8 35,849 + AO353_00185 0.59 +0.3 35,850 - AO353_00185 0.60 +1.4 36,041 - +0.5 36,121 + +0.3 36,121 + -0.5 36,121 + +0.2 36,122 - -0.8 36,122 - -0.4 36,122 - -0.2 36,122 - +0.3 36,122 - +0.1 36,210 - AO353_00190 0.15 -0.1 36,321 + AO353_00190 0.25 +0.3 36,321 + AO353_00190 0.25 -0.6 36,421 + AO353_00190 0.34 +0.1 36,443 - AO353_00190 0.36 +0.4 36,443 - AO353_00190 0.36 +1.0 36,586 - AO353_00190 0.49 +1.1 36,704 - AO353_00190 0.60 +0.6 36,704 - AO353_00190 0.60 +0.5 36,704 - AO353_00190 0.60 +0.3 36,756 + AO353_00190 0.64 +0.0 36,756 + AO353_00190 0.64 -1.7 36,757 - AO353_00190 0.64 +0.8 36,769 + AO353_00190 0.65 +0.3 36,769 + AO353_00190 0.65 +0.7 36,769 + AO353_00190 0.65 +0.7 36,769 + AO353_00190 0.65 +1.1 36,770 - AO353_00190 0.66 +0.3 36,804 - AO353_00190 0.69 +1.9 37,084 + -0.5 37,084 + +0.1 37,084 + +1.8 37,084 + +0.6 37,085 - -0.1 37,181 + -0.2 37,181 + +1.0 37,182 - +0.6 37,341 + AO353_00195 0.26 -1.6 37,341 + AO353_00195 0.26 -1.1 37,341 + AO353_00195 0.26 +0.8 37,342 - AO353_00195 0.26 +1.1 37,342 - AO353_00195 0.26 -0.2 37,772 + AO353_00195 0.89 -0.2 37,806 - +0.2 37,837 + +0.3 37,952 - AO353_00200 0.26 +1.3 38,124 + AO353_00200 0.64 +1.1
Or see this region's nucleotide sequence