Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3409

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3407 and panB are separated by 56 nucleotidespanB and panC are separated by 76 nucleotidespanC and Shewana3_3410 are separated by 291 nucleotidesShewana3_3410 and Shewana3_3411 are separated by 61 nucleotides Shewana3_3407: Shewana3_3407 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 4,076,228 to 4,076,716 _3407 Shewana3_3408: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 4,076,773 to 4,077,567 panB Shewana3_3409: panC - pantoate--beta-alanine ligase (RefSeq), at 4,077,644 to 4,078,489 panC Shewana3_3410: Shewana3_3410 - hypothetical protein (RefSeq), at 4,078,781 to 4,079,302 _3410 Shewana3_3411: Shewana3_3411 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 4,079,364 to 4,081,871 _3411 Position (kb) 4077 4078 4079Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4076.890 kb on + strand, within panBat 4077.047 kb on + strand, within panBat 4077.081 kb on + strand, within panBat 4077.163 kb on + strand, within panBat 4077.433 kb on + strand, within panBat 4077.443 kb on + strand, within panBat 4078.547 kb on - strandat 4078.547 kb on - strandat 4078.547 kb on - strandat 4078.547 kb on - strandat 4078.552 kb on - strandat 4078.665 kb on + strandat 4079.051 kb on - strand, within Shewana3_3410at 4079.370 kb on - strandat 4079.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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4,076,890 + panB Shewana3_3408 0.15 -2.3
4,077,047 + panB Shewana3_3408 0.34 -0.9
4,077,081 + panB Shewana3_3408 0.39 -3.3
4,077,163 + panB Shewana3_3408 0.49 -4.5
4,077,433 + panB Shewana3_3408 0.83 -2.8
4,077,443 + panB Shewana3_3408 0.84 -3.4
4,078,547 - +0.1
4,078,547 - +0.5
4,078,547 - +0.1
4,078,547 - -0.2
4,078,552 - +0.4
4,078,665 + -0.5
4,079,051 - Shewana3_3410 0.52 +0.6
4,079,370 - +0.2
4,079,370 - -0.1

Or see this region's nucleotide sequence