Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1672 and Shewana3_1673 are separated by 153 nucleotides Shewana3_1673 and Shewana3_1674 are separated by 273 nucleotides
Shewana3_1672: Shewana3_1672 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) , at 1,964,658 to 1,965,827
_1672
Shewana3_1673: Shewana3_1673 - MerR family transcriptional regulator (RefSeq), at 1,965,981 to 1,966,385
_1673
Shewana3_1674: Shewana3_1674 - peptidoglycan binding domain-containing protein (RefSeq), at 1,966,659 to 1,968,341
_1674
Position (kb)
1965
1966
1967 Strain fitness (log2 ratio)
-1
0
1 at 1965.152 kb on + strand, within Shewana3_1672 at 1965.173 kb on + strand, within Shewana3_1672 at 1965.182 kb on + strand, within Shewana3_1672 at 1965.359 kb on + strand, within Shewana3_1672 at 1965.504 kb on - strand, within Shewana3_1672 at 1965.530 kb on + strand, within Shewana3_1672 at 1965.530 kb on + strand, within Shewana3_1672 at 1965.612 kb on + strand, within Shewana3_1672 at 1965.810 kb on + strand at 1965.810 kb on + strand at 1965.848 kb on - strand at 1965.896 kb on + strand at 1965.904 kb on - strand at 1965.904 kb on - strand at 1965.978 kb on + strand at 1966.062 kb on - strand, within Shewana3_1673 at 1966.125 kb on - strand, within Shewana3_1673 at 1966.125 kb on - strand, within Shewana3_1673 at 1966.219 kb on - strand, within Shewana3_1673 at 1966.219 kb on - strand, within Shewana3_1673 at 1966.219 kb on - strand, within Shewana3_1673 at 1966.241 kb on - strand, within Shewana3_1673 at 1966.539 kb on - strand at 1966.716 kb on + strand at 1966.724 kb on - strand at 1966.789 kb on - strand at 1966.803 kb on - strand at 1967.245 kb on + strand, within Shewana3_1674
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,965,152 + Shewana3_1672 0.42 -0.1 1,965,173 + Shewana3_1672 0.44 -0.1 1,965,182 + Shewana3_1672 0.45 +0.1 1,965,359 + Shewana3_1672 0.60 -0.3 1,965,504 - Shewana3_1672 0.72 +0.5 1,965,530 + Shewana3_1672 0.75 -0.5 1,965,530 + Shewana3_1672 0.75 +0.1 1,965,612 + Shewana3_1672 0.82 -0.1 1,965,810 + -0.8 1,965,810 + -0.3 1,965,848 - -0.6 1,965,896 + +0.2 1,965,904 - +0.2 1,965,904 - +0.3 1,965,978 + +0.2 1,966,062 - Shewana3_1673 0.20 -1.1 1,966,125 - Shewana3_1673 0.36 -0.9 1,966,125 - Shewana3_1673 0.36 -1.0 1,966,219 - Shewana3_1673 0.59 -1.5 1,966,219 - Shewana3_1673 0.59 -1.3 1,966,219 - Shewana3_1673 0.59 -0.4 1,966,241 - Shewana3_1673 0.64 -0.9 1,966,539 - +1.0 1,966,716 + -0.3 1,966,724 - -0.0 1,966,789 - +0.8 1,966,803 - +0.4 1,967,245 + Shewana3_1674 0.35 -0.5
Or see this region's nucleotide sequence