Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1639 and Shewana3_1640 are separated by 226 nucleotides Shewana3_1640 and Shewana3_1641 are separated by 129 nucleotides
Shewana3_1639: Shewana3_1639 - manganese and iron superoxide dismutase (RefSeq), at 1,930,754 to 1,931,338
_1639
Shewana3_1640: Shewana3_1640 - glutaredoxin-like protein (RefSeq), at 1,931,565 to 1,931,897
_1640
Shewana3_1641: Shewana3_1641 - uracil-xanthine permease (RefSeq), at 1,932,027 to 1,933,265
_1641
Position (kb)
1931
1932 Strain fitness (log2 ratio)
-1
0
1
2 at 1930.759 kb on - strand at 1930.759 kb on - strand at 1931.392 kb on + strand at 1931.480 kb on - strand at 1931.504 kb on - strand at 1931.506 kb on + strand at 1931.621 kb on + strand, within Shewana3_1640 at 1931.621 kb on + strand, within Shewana3_1640 at 1931.801 kb on + strand, within Shewana3_1640 at 1931.887 kb on - strand at 1932.015 kb on + strand at 1932.023 kb on - strand at 1932.025 kb on + strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.103 kb on - strand at 1932.304 kb on + strand, within Shewana3_1641 at 1932.321 kb on + strand, within Shewana3_1641 at 1932.344 kb on - strand, within Shewana3_1641 at 1932.393 kb on + strand, within Shewana3_1641 at 1932.452 kb on - strand, within Shewana3_1641 at 1932.861 kb on - strand, within Shewana3_1641 at 1932.861 kb on - strand, within Shewana3_1641
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,930,759 - -1.2 1,930,759 - -1.3 1,931,392 + +0.6 1,931,480 - -0.4 1,931,504 - -0.6 1,931,506 + -0.4 1,931,621 + Shewana3_1640 0.17 -1.4 1,931,621 + Shewana3_1640 0.17 -0.9 1,931,801 + Shewana3_1640 0.71 -1.4 1,931,887 - +1.9 1,932,015 + -0.8 1,932,023 - -0.5 1,932,025 + -0.0 1,932,033 - -0.4 1,932,033 - +0.2 1,932,033 - +0.5 1,932,033 - -0.7 1,932,033 - -0.1 1,932,103 - +1.1 1,932,304 + Shewana3_1641 0.22 -0.3 1,932,321 + Shewana3_1641 0.24 +0.5 1,932,344 - Shewana3_1641 0.26 +1.2 1,932,393 + Shewana3_1641 0.30 +0.7 1,932,452 - Shewana3_1641 0.34 +0.3 1,932,861 - Shewana3_1641 0.67 +0.1 1,932,861 - Shewana3_1641 0.67 -0.9
Or see this region's nucleotide sequence