Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1581 and Shewana3_1582 are separated by 92 nucleotides Shewana3_1582 and Shewana3_1583 are separated by 316 nucleotides
Shewana3_1581: Shewana3_1581 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,850,125 to 1,851,189
_1581
Shewana3_1582: Shewana3_1582 - GntR family transcriptional regulator (RefSeq), at 1,851,282 to 1,851,953
_1582
Shewana3_1583: Shewana3_1583 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 1,852,270 to 1,852,821
_1583
Position (kb)
1851
1852 Strain fitness (log2 ratio)
-1
0
1 at 1850.447 kb on - strand, within Shewana3_1581 at 1850.730 kb on + strand, within Shewana3_1581 at 1850.811 kb on - strand, within Shewana3_1581 at 1850.813 kb on + strand, within Shewana3_1581 at 1850.830 kb on + strand, within Shewana3_1581 at 1850.844 kb on - strand, within Shewana3_1581 at 1851.069 kb on - strand, within Shewana3_1581 at 1851.499 kb on - strand, within Shewana3_1582 at 1851.819 kb on + strand, within Shewana3_1582 at 1852.121 kb on - strand at 1852.179 kb on + strand at 1852.260 kb on + strand at 1852.268 kb on - strand at 1852.268 kb on - strand at 1852.583 kb on - strand, within Shewana3_1583 at 1852.661 kb on + strand, within Shewana3_1583 at 1852.686 kb on + strand, within Shewana3_1583 at 1852.741 kb on + strand, within Shewana3_1583 at 1852.749 kb on - strand, within Shewana3_1583 at 1852.948 kb on + strand at 1852.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,850,447 - Shewana3_1581 0.30 -0.1 1,850,730 + Shewana3_1581 0.57 +0.9 1,850,811 - Shewana3_1581 0.64 +0.9 1,850,813 + Shewana3_1581 0.65 -0.7 1,850,830 + Shewana3_1581 0.66 -1.4 1,850,844 - Shewana3_1581 0.68 -0.1 1,851,069 - Shewana3_1581 0.89 +0.9 1,851,499 - Shewana3_1582 0.32 -1.4 1,851,819 + Shewana3_1582 0.80 -0.7 1,852,121 - +0.0 1,852,179 + -1.7 1,852,260 + +0.9 1,852,268 - -1.7 1,852,268 - -0.1 1,852,583 - Shewana3_1583 0.57 +0.3 1,852,661 + Shewana3_1583 0.71 +0.9 1,852,686 + Shewana3_1583 0.75 +0.5 1,852,741 + Shewana3_1583 0.85 -1.7 1,852,749 - Shewana3_1583 0.87 -0.7 1,852,948 + +0.1 1,852,948 + +0.1
Or see this region's nucleotide sequence