Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1468 and Shewana3_1469 are separated by 114 nucleotides Shewana3_1469 and Shewana3_1470 are separated by 69 nucleotides
Shewana3_1468: Shewana3_1468 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq), at 1,706,764 to 1,707,708
_1468
Shewana3_1469: Shewana3_1469 - chorismate synthase (RefSeq), at 1,707,823 to 1,708,917
_1469
Shewana3_1470: Shewana3_1470 - major facilitator transporter (RefSeq), at 1,708,987 to 1,710,156
_1470
Position (kb)
1707
1708
1709 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1706.941 kb on + strand, within Shewana3_1468 at 1707.110 kb on - strand, within Shewana3_1468 at 1707.224 kb on + strand, within Shewana3_1468 at 1707.299 kb on + strand, within Shewana3_1468 at 1707.398 kb on + strand, within Shewana3_1468 at 1707.484 kb on + strand, within Shewana3_1468 at 1707.881 kb on + strand at 1707.952 kb on + strand, within Shewana3_1469 at 1708.184 kb on - strand, within Shewana3_1469 at 1708.286 kb on + strand, within Shewana3_1469 at 1708.572 kb on - strand, within Shewana3_1469 at 1708.741 kb on + strand, within Shewana3_1469 at 1708.792 kb on + strand, within Shewana3_1469 at 1708.825 kb on + strand at 1708.889 kb on + strand at 1708.889 kb on + strand at 1708.897 kb on - strand at 1708.897 kb on - strand at 1709.006 kb on - strand at 1709.080 kb on - strand at 1709.161 kb on - strand, within Shewana3_1470 at 1709.305 kb on - strand, within Shewana3_1470 at 1709.443 kb on + strand, within Shewana3_1470 at 1709.481 kb on - strand, within Shewana3_1470 at 1709.586 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,706,941 + Shewana3_1468 0.19 -1.6 1,707,110 - Shewana3_1468 0.37 +0.2 1,707,224 + Shewana3_1468 0.49 +0.1 1,707,299 + Shewana3_1468 0.57 -0.1 1,707,398 + Shewana3_1468 0.67 -0.6 1,707,484 + Shewana3_1468 0.76 -0.9 1,707,881 + -2.0 1,707,952 + Shewana3_1469 0.12 -2.0 1,708,184 - Shewana3_1469 0.33 -3.6 1,708,286 + Shewana3_1469 0.42 -2.0 1,708,572 - Shewana3_1469 0.68 -0.6 1,708,741 + Shewana3_1469 0.84 -0.6 1,708,792 + Shewana3_1469 0.88 +0.0 1,708,825 + -2.0 1,708,889 + -0.1 1,708,889 + -0.2 1,708,897 - +0.5 1,708,897 - -0.4 1,709,006 - +0.3 1,709,080 - -0.7 1,709,161 - Shewana3_1470 0.15 +0.6 1,709,305 - Shewana3_1470 0.27 +0.6 1,709,443 + Shewana3_1470 0.39 -0.3 1,709,481 - Shewana3_1470 0.42 -0.5 1,709,586 + Shewana3_1470 0.51 -0.2 1,709,669 + Shewana3_1470 0.58 -0.1 1,709,669 + Shewana3_1470 0.58 -0.7 1,709,677 - Shewana3_1470 0.59 +0.1 1,709,677 - Shewana3_1470 0.59 +1.2
Or see this region's nucleotide sequence