Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0027 and Shewana3_0028 are separated by 1 nucleotides Shewana3_0028 and Shewana3_0029 are separated by 54 nucleotides Shewana3_0029 and Shewana3_0030 are separated by 198 nucleotides
Shewana3_0027: Shewana3_0027 - TrkH family potassium uptake protein (RefSeq), at 34,058 to 35,515
_0027
Shewana3_0028: Shewana3_0028 - protoporphyrinogen oxidase (RefSeq), at 35,517 to 36,041
_0028
Shewana3_0029: Shewana3_0029 - ArsR family transcriptional regulator (RefSeq), at 36,096 to 36,404
_0029
Shewana3_0030: Shewana3_0030 - protoporphyrinogen oxidase (RefSeq), at 36,603 to 37,157
_0030
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1
2 at 34.631 kb on - strand, within Shewana3_0027 at 35.056 kb on + strand, within Shewana3_0027 at 35.121 kb on + strand, within Shewana3_0027 at 35.121 kb on + strand, within Shewana3_0027 at 35.129 kb on - strand, within Shewana3_0027 at 35.136 kb on + strand, within Shewana3_0027 at 35.179 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.270 kb on + strand, within Shewana3_0027 at 35.276 kb on + strand, within Shewana3_0027 at 35.276 kb on + strand, within Shewana3_0027 at 35.278 kb on - strand, within Shewana3_0027 at 35.293 kb on + strand, within Shewana3_0027 at 35.319 kb on + strand, within Shewana3_0027 at 35.366 kb on - strand, within Shewana3_0027 at 35.373 kb on + strand at 35.621 kb on - strand, within Shewana3_0028 at 35.631 kb on - strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.641 kb on + strand, within Shewana3_0028 at 35.648 kb on - strand, within Shewana3_0028 at 35.649 kb on - strand, within Shewana3_0028 at 35.674 kb on - strand, within Shewana3_0028 at 35.742 kb on + strand, within Shewana3_0028 at 35.742 kb on + strand, within Shewana3_0028 at 35.750 kb on - strand, within Shewana3_0028 at 35.853 kb on - strand, within Shewana3_0028 at 35.925 kb on + strand, within Shewana3_0028 at 35.975 kb on - strand, within Shewana3_0028 at 36.060 kb on - strand at 36.060 kb on - strand at 36.078 kb on - strand at 36.092 kb on - strand at 36.115 kb on - strand at 36.159 kb on - strand, within Shewana3_0029 at 36.159 kb on - strand, within Shewana3_0029 at 36.159 kb on - strand, within Shewana3_0029 at 36.170 kb on - strand, within Shewana3_0029 at 36.170 kb on - strand, within Shewana3_0029 at 36.593 kb on + strand at 36.691 kb on + strand, within Shewana3_0030 at 36.696 kb on + strand, within Shewana3_0030 at 36.775 kb on + strand, within Shewana3_0030 at 36.884 kb on + strand, within Shewana3_0030 at 37.007 kb on - strand, within Shewana3_0030 at 37.008 kb on + strand, within Shewana3_0030
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 34,631 - Shewana3_0027 0.39 +0.3 35,056 + Shewana3_0027 0.68 -0.6 35,121 + Shewana3_0027 0.73 +0.6 35,121 + Shewana3_0027 0.73 -1.1 35,129 - Shewana3_0027 0.73 +0.6 35,136 + Shewana3_0027 0.74 +0.8 35,179 - Shewana3_0027 0.77 +0.9 35,196 - Shewana3_0027 0.78 +2.0 35,196 - Shewana3_0027 0.78 -0.4 35,196 - Shewana3_0027 0.78 +0.9 35,270 + Shewana3_0027 0.83 +0.2 35,276 + Shewana3_0027 0.84 +0.6 35,276 + Shewana3_0027 0.84 +1.0 35,278 - Shewana3_0027 0.84 -0.1 35,293 + Shewana3_0027 0.85 +0.6 35,319 + Shewana3_0027 0.86 +0.1 35,366 - Shewana3_0027 0.90 +0.8 35,373 + +0.3 35,621 - Shewana3_0028 0.20 +0.7 35,631 - Shewana3_0028 0.22 +0.7 35,640 + Shewana3_0028 0.23 +0.1 35,640 + Shewana3_0028 0.23 +0.6 35,640 + Shewana3_0028 0.23 +0.8 35,641 + Shewana3_0028 0.24 +0.5 35,648 - Shewana3_0028 0.25 -0.4 35,649 - Shewana3_0028 0.25 +0.6 35,674 - Shewana3_0028 0.30 +0.7 35,742 + Shewana3_0028 0.43 +0.8 35,742 + Shewana3_0028 0.43 +0.2 35,750 - Shewana3_0028 0.44 +0.6 35,853 - Shewana3_0028 0.64 +0.6 35,925 + Shewana3_0028 0.78 -0.2 35,975 - Shewana3_0028 0.87 -0.5 36,060 - -1.1 36,060 - -0.0 36,078 - -0.6 36,092 - -0.0 36,115 - +0.5 36,159 - Shewana3_0029 0.20 -0.6 36,159 - Shewana3_0029 0.20 +0.4 36,159 - Shewana3_0029 0.20 +0.1 36,170 - Shewana3_0029 0.24 -0.5 36,170 - Shewana3_0029 0.24 -0.8 36,593 + +0.3 36,691 + Shewana3_0030 0.16 -0.1 36,696 + Shewana3_0030 0.17 +0.1 36,775 + Shewana3_0030 0.31 +0.5 36,884 + Shewana3_0030 0.51 +0.5 37,007 - Shewana3_0030 0.73 +0.4 37,008 + Shewana3_0030 0.73 -0.4
Or see this region's nucleotide sequence