Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0400 and BT0401 overlap by 4 nucleotides BT0401 and BT0402 are separated by 251 nucleotides BT0402 and BT0403 are separated by 7 nucleotides BT0403 and BT0404 are separated by 258 nucleotides
BT0400: BT0400 - putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file), at 488,578 to 489,867
BT0400
BT0401: BT0401 - hypothetical protein (NCBI ptt file), at 489,864 to 490,082
BT0401
BT0402: BT0402 - hypothetical protein (NCBI ptt file), at 490,334 to 490,843
BT0402
BT0403: BT0403 - hypothetical protein (NCBI ptt file), at 490,851 to 491,348
BT0403
BT0404: BT0404 - hypothetical protein (NCBI ptt file), at 491,607 to 493,934
BT0404
Position (kb) 490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 489.723 kb on + strand, within BT0400 at 489.787 kb on + strand at 490.026 kb on + strand, within BT0401 at 490.070 kb on - strand at 490.103 kb on - strand at 490.146 kb on + strand at 490.187 kb on + strand at 490.266 kb on - strand at 490.318 kb on + strand at 490.332 kb on + strand at 490.360 kb on - strand at 490.474 kb on + strand, within BT0402 at 490.474 kb on + strand, within BT0402 at 490.614 kb on - strand, within BT0402 at 490.667 kb on - strand, within BT0402 at 490.667 kb on - strand, within BT0402 at 490.714 kb on - strand, within BT0402 at 490.968 kb on - strand, within BT0403 at 490.968 kb on - strand, within BT0403 at 490.970 kb on - strand, within BT0403 at 491.386 kb on + strand at 491.413 kb on + strand at 491.598 kb on - strand at 491.604 kb on - strand at 491.638 kb on - strand at 491.638 kb on - strand at 491.774 kb on + strand at 491.829 kb on + strand at 491.838 kb on - strand at 491.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 489,723 + BT0400 0.89 +0.6 489,787 + -1.1 490,026 + BT0401 0.74 -0.0 490,070 - +1.6 490,103 - -0.9 490,146 + -0.8 490,187 + -1.2 490,266 - -0.4 490,318 + +0.6 490,332 + -1.2 490,360 - +1.9 490,474 + BT0402 0.27 -1.2 490,474 + BT0402 0.27 -1.2 490,614 - BT0402 0.55 +1.6 490,667 - BT0402 0.65 -0.4 490,667 - BT0402 0.65 -0.4 490,714 - BT0402 0.75 -1.6 490,968 - BT0403 0.23 -1.0 490,968 - BT0403 0.23 +0.6 490,970 - BT0403 0.24 +0.6 491,386 + -0.8 491,413 + -0.2 491,598 - -1.8 491,604 - -1.8 491,638 - -0.9 491,638 - +0.6 491,774 + +0.6 491,829 + -0.6 491,838 - -1.2 491,838 - -0.3
Or see this region's nucleotide sequence