Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35770 and RR42_RS35775 are separated by 263 nucleotides RR42_RS35775 and RR42_RS35780 are separated by 10 nucleotides RR42_RS35780 and RR42_RS35785 are separated by 88 nucleotides
RR42_RS35770: RR42_RS35770 - flagellar biosynthesis protein FlhB, at 3,473,757 to 3,474,899
_RS35770
RR42_RS35775: RR42_RS35775 - chemotaxis protein CheZ, at 3,475,163 to 3,475,798
_RS35775
RR42_RS35780: RR42_RS35780 - chemotaxis protein CheY, at 3,475,809 to 3,476,204
_RS35780
RR42_RS35785: RR42_RS35785 - chemotaxis protein, at 3,476,293 to 3,477,369
_RS35785
Position (kb)
3475
3476
3477 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3474.980 kb on + strand at 3474.981 kb on - strand at 3475.633 kb on + strand, within RR42_RS35775 at 3475.636 kb on - strand, within RR42_RS35775 at 3475.636 kb on - strand, within RR42_RS35775 at 3475.636 kb on - strand, within RR42_RS35775 at 3475.712 kb on - strand, within RR42_RS35775 at 3475.891 kb on + strand, within RR42_RS35780 at 3476.132 kb on + strand, within RR42_RS35780 at 3476.133 kb on - strand, within RR42_RS35780 at 3476.220 kb on - strand at 3476.243 kb on + strand at 3476.369 kb on - strand at 3476.450 kb on + strand, within RR42_RS35785 at 3476.450 kb on + strand, within RR42_RS35785 at 3476.450 kb on + strand, within RR42_RS35785 at 3476.451 kb on - strand, within RR42_RS35785 at 3476.479 kb on - strand, within RR42_RS35785 at 3476.621 kb on + strand, within RR42_RS35785 at 3476.621 kb on + strand, within RR42_RS35785 at 3476.621 kb on + strand, within RR42_RS35785 at 3476.622 kb on - strand, within RR42_RS35785 at 3476.622 kb on - strand, within RR42_RS35785 at 3476.622 kb on - strand, within RR42_RS35785 at 3476.622 kb on - strand, within RR42_RS35785 at 3476.622 kb on - strand, within RR42_RS35785 at 3476.622 kb on - strand, within RR42_RS35785 at 3476.670 kb on + strand, within RR42_RS35785 at 3476.670 kb on + strand, within RR42_RS35785 at 3476.672 kb on + strand, within RR42_RS35785 at 3476.672 kb on + strand, within RR42_RS35785 at 3476.672 kb on + strand, within RR42_RS35785 at 3476.672 kb on + strand, within RR42_RS35785 at 3476.673 kb on - strand, within RR42_RS35785 at 3476.673 kb on - strand, within RR42_RS35785 at 3476.679 kb on - strand, within RR42_RS35785 at 3476.871 kb on + strand, within RR42_RS35785 at 3476.872 kb on - strand, within RR42_RS35785
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 3,474,980 + -0.4 3,474,981 - -2.7 3,475,633 + RR42_RS35775 0.74 -0.6 3,475,636 - RR42_RS35775 0.74 -1.1 3,475,636 - RR42_RS35775 0.74 -0.1 3,475,636 - RR42_RS35775 0.74 -0.7 3,475,712 - RR42_RS35775 0.86 -0.6 3,475,891 + RR42_RS35780 0.21 +0.4 3,476,132 + RR42_RS35780 0.82 +0.1 3,476,133 - RR42_RS35780 0.82 -1.0 3,476,220 - -0.4 3,476,243 + -1.3 3,476,369 - +0.2 3,476,450 + RR42_RS35785 0.15 +0.2 3,476,450 + RR42_RS35785 0.15 +0.5 3,476,450 + RR42_RS35785 0.15 +0.1 3,476,451 - RR42_RS35785 0.15 +0.1 3,476,479 - RR42_RS35785 0.17 -2.9 3,476,621 + RR42_RS35785 0.30 -2.3 3,476,621 + RR42_RS35785 0.30 +1.3 3,476,621 + RR42_RS35785 0.30 -2.9 3,476,622 - RR42_RS35785 0.31 +1.9 3,476,622 - RR42_RS35785 0.31 +0.2 3,476,622 - RR42_RS35785 0.31 -0.9 3,476,622 - RR42_RS35785 0.31 -0.0 3,476,622 - RR42_RS35785 0.31 -0.8 3,476,622 - RR42_RS35785 0.31 -1.4 3,476,670 + RR42_RS35785 0.35 +1.1 3,476,670 + RR42_RS35785 0.35 -0.9 3,476,672 + RR42_RS35785 0.35 -0.2 3,476,672 + RR42_RS35785 0.35 -0.2 3,476,672 + RR42_RS35785 0.35 -0.0 3,476,672 + RR42_RS35785 0.35 -0.4 3,476,673 - RR42_RS35785 0.35 +0.6 3,476,673 - RR42_RS35785 0.35 -0.7 3,476,679 - RR42_RS35785 0.36 -0.1 3,476,871 + RR42_RS35785 0.54 +0.2 3,476,872 - RR42_RS35785 0.54 -0.0
Or see this region's nucleotide sequence