Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30785

Experiment: R2A with Cephalothin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cephalothin 0.25 mg/ml
2,283,639	+		RR42_RS30775	0.56	+0.2
2,283,639	+		RR42_RS30775	0.56	-0.6
2,283,640	-		RR42_RS30775	0.56	+0.1
2,283,640	-		RR42_RS30775	0.56	-0.7
2,283,658	-		RR42_RS30775	0.58	-2.0
2,283,825	+		RR42_RS30775	0.73	-0.0
2,283,897	+		RR42_RS30775	0.79	+0.3
2,283,966	+		RR42_RS30775	0.85	+0.2
2,283,966	+		RR42_RS30775	0.85	-0.6
2,283,967	-		RR42_RS30775	0.85	-0.3
2,283,993	+		RR42_RS30775	0.87	-1.5
2,283,993	+		RR42_RS30775	0.87	-0.3
2,284,042	-				+0.0
2,284,059	+				+1.1
2,284,060	-				-0.3
2,284,060	-				-0.4
2,284,060	-				-0.6
2,284,090	+				+0.1
2,284,090	+				-0.6
2,284,091	-				+0.8
2,284,091	-				+0.1
2,284,091	-				+0.6
2,284,091	-				-1.3
2,284,137	+				-0.2
2,284,137	+				+0.2
2,284,207	+				-1.2
2,284,272	+				+0.6
2,284,273	-				-0.5
2,284,365	-				-0.4
2,284,520	-				-1.6
2,284,766	-		RR42_RS30785	0.15	-0.0
2,284,865	+		RR42_RS30785	0.23	-0.2
2,284,866	-		RR42_RS30785	0.23	+1.9
2,285,000	+		RR42_RS30785	0.33	+1.0
2,285,000	+		RR42_RS30785	0.33	+1.0
2,285,000	+		RR42_RS30785	0.33	-1.1
2,285,001	-		RR42_RS30785	0.33	+0.2
2,285,001	-		RR42_RS30785	0.33	+1.3
2,285,001	-		RR42_RS30785	0.33	+0.6
2,285,001	-		RR42_RS30785	0.33	+3.4
2,285,001	-		RR42_RS30785	0.33	-1.0
2,285,021	+		RR42_RS30785	0.35	+0.6
2,285,021	+		RR42_RS30785	0.35	-0.4
2,285,021	+		RR42_RS30785	0.35	+0.5
2,285,022	-		RR42_RS30785	0.35	-0.2
2,285,022	-		RR42_RS30785	0.35	-1.1
2,285,092	+		RR42_RS30785	0.40	+0.6
2,285,092	+		RR42_RS30785	0.40	+0.2
2,285,093	-		RR42_RS30785	0.40	+0.1
2,285,093	-		RR42_RS30785	0.40	+0.3
2,285,093	-		RR42_RS30785	0.40	+0.3
2,285,093	-		RR42_RS30785	0.40	+0.2
2,285,095	+		RR42_RS30785	0.41	-1.3
2,285,095	+		RR42_RS30785	0.41	+0.2
2,285,095	+		RR42_RS30785	0.41	-0.0
2,285,095	+		RR42_RS30785	0.41	+0.0
2,285,095	+		RR42_RS30785	0.41	+0.5
2,285,095	+		RR42_RS30785	0.41	+0.4
2,285,095	+		RR42_RS30785	0.41	+1.2
2,285,096	-		RR42_RS30785	0.41	-1.3
2,285,268	-		RR42_RS30785	0.54	-0.7
2,285,268	-		RR42_RS30785	0.54	-0.1
2,285,425	+		RR42_RS30785	0.67	+0.8
2,285,653	+		RR42_RS30785	0.85	+1.3
2,285,976	+				+0.8
2,285,976	+				+0.4
2,285,976	+				+0.2
2,285,992	-		RR42_RS30790	0.11	+0.5
2,286,001	-		RR42_RS30790	0.12	-0.6
2,286,163	+		RR42_RS30790	0.29	+0.4
2,286,163	+		RR42_RS30790	0.29	-0.8
2,286,163	+		RR42_RS30790	0.29	+0.4
2,286,163	+		RR42_RS30790	0.29	+0.2
2,286,164	-		RR42_RS30790	0.29	+0.1
2,286,164	-		RR42_RS30790	0.29	+0.2
2,286,164	-		RR42_RS30790	0.29	-1.3
2,286,421	+		RR42_RS30790	0.55	+0.1
2,286,421	+		RR42_RS30790	0.55	+0.9
2,286,422	-		RR42_RS30790	0.56	-0.4
2,286,422	-		RR42_RS30790	0.56	+0.3
2,286,428	+		RR42_RS30790	0.56	+0.1
2,286,429	-		RR42_RS30790	0.56	-1.1
2,286,519	+		RR42_RS30790	0.66	+0.2
2,286,519	+		RR42_RS30790	0.66	+0.0
2,286,519	+		RR42_RS30790	0.66	+1.1
2,286,520	-		RR42_RS30790	0.66	-0.2
2,286,520	-		RR42_RS30790	0.66	+0.3
2,286,522	+		RR42_RS30790	0.66	+0.0
2,286,522	+		RR42_RS30790	0.66	-0.3
2,286,522	+		RR42_RS30790	0.66	+0.3
2,286,522	+		RR42_RS30790	0.66	+0.6
2,286,522	+		RR42_RS30790	0.66	+0.6
2,286,523	-		RR42_RS30790	0.66	+0.1
2,286,609	-		RR42_RS30790	0.75	-0.0
2,286,672	+		RR42_RS30790	0.81	-1.2
2,286,672	+		RR42_RS30790	0.81	+0.5
2,286,673	-		RR42_RS30790	0.82	-0.4
2,286,673	-		RR42_RS30790	0.82	-1.5
2,286,735	-		RR42_RS30790	0.88	+0.3
2,286,801	-				+1.2