Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27095

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27090 and RR42_RS27095 are separated by 625 nucleotidesRR42_RS27095 and RR42_RS27100 are separated by 77 nucleotides RR42_RS27090: RR42_RS27090 - chemotaxis protein CheV, at 1,430,238 to 1,431,200 _RS27090 RR42_RS27095: RR42_RS27095 - hypothetical protein, at 1,431,826 to 1,432,677 _RS27095 RR42_RS27100: RR42_RS27100 - hypothetical protein, at 1,432,755 to 1,434,686 _RS27100 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -1 0 1at 1431.138 kb on + strandat 1431.139 kb on - strandat 1431.139 kb on - strandat 1431.139 kb on - strandat 1431.139 kb on - strandat 1431.348 kb on - strandat 1431.523 kb on - strandat 1431.529 kb on - strandat 1431.529 kb on - strandat 1432.151 kb on + strand, within RR42_RS27095at 1432.447 kb on + strand, within RR42_RS27095at 1432.693 kb on + strandat 1432.839 kb on + strandat 1433.231 kb on + strand, within RR42_RS27100at 1433.282 kb on - strand, within RR42_RS27100at 1433.282 kb on - strand, within RR42_RS27100at 1433.282 kb on - strand, within RR42_RS27100at 1433.282 kb on - strand, within RR42_RS27100

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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1,431,138 + +0.3
1,431,139 - +0.1
1,431,139 - -0.1
1,431,139 - +0.2
1,431,139 - -0.3
1,431,348 - +1.7
1,431,523 - +0.6
1,431,529 - +0.0
1,431,529 - +0.1
1,432,151 + RR42_RS27095 0.38 +0.5
1,432,447 + RR42_RS27095 0.73 +1.0
1,432,693 + -0.1
1,432,839 + +0.9
1,433,231 + RR42_RS27100 0.25 +0.2
1,433,282 - RR42_RS27100 0.27 -1.2
1,433,282 - RR42_RS27100 0.27 +0.1
1,433,282 - RR42_RS27100 0.27 -1.6
1,433,282 - RR42_RS27100 0.27 -1.0

Or see this region's nucleotide sequence