Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24800

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24795 and RR42_RS24800 are separated by 28 nucleotidesRR42_RS24800 and RR42_RS24805 are separated by 10 nucleotides RR42_RS24795: RR42_RS24795 - butyryl-CoA dehydrogenase, at 901,264 to 902,412 _RS24795 RR42_RS24800: RR42_RS24800 - dehydratase, at 902,441 to 902,956 _RS24800 RR42_RS24805: RR42_RS24805 - thiolase, at 902,967 to 904,181 _RS24805 Position (kb) 902 903Strain fitness (log2 ratio) -2 -1 0 1at 901.594 kb on + strand, within RR42_RS24795at 901.595 kb on - strand, within RR42_RS24795at 902.018 kb on - strand, within RR42_RS24795at 902.323 kb on + strandat 902.324 kb on - strandat 902.434 kb on + strandat 902.435 kb on - strandat 902.562 kb on - strand, within RR42_RS24800at 902.562 kb on - strand, within RR42_RS24800at 902.609 kb on + strand, within RR42_RS24800at 902.660 kb on + strand, within RR42_RS24800at 902.661 kb on - strand, within RR42_RS24800at 902.711 kb on + strand, within RR42_RS24800at 902.712 kb on - strand, within RR42_RS24800at 902.712 kb on - strand, within RR42_RS24800at 902.747 kb on + strand, within RR42_RS24800at 902.747 kb on + strand, within RR42_RS24800at 902.773 kb on - strand, within RR42_RS24800at 903.013 kb on - strandat 903.013 kb on - strandat 903.405 kb on + strand, within RR42_RS24805at 903.439 kb on - strand, within RR42_RS24805at 903.632 kb on - strand, within RR42_RS24805at 903.679 kb on - strand, within RR42_RS24805at 903.714 kb on + strand, within RR42_RS24805at 903.715 kb on - strand, within RR42_RS24805at 903.715 kb on - strand, within RR42_RS24805at 903.943 kb on - strand, within RR42_RS24805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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901,594 + RR42_RS24795 0.29 +0.3
901,595 - RR42_RS24795 0.29 +0.5
902,018 - RR42_RS24795 0.66 +0.3
902,323 + -0.5
902,324 - -0.3
902,434 + +1.4
902,435 - +0.1
902,562 - RR42_RS24800 0.23 -2.5
902,562 - RR42_RS24800 0.23 -0.1
902,609 + RR42_RS24800 0.33 +0.3
902,660 + RR42_RS24800 0.42 -0.1
902,661 - RR42_RS24800 0.43 -0.9
902,711 + RR42_RS24800 0.52 -0.4
902,712 - RR42_RS24800 0.53 +0.5
902,712 - RR42_RS24800 0.53 -0.5
902,747 + RR42_RS24800 0.59 -0.3
902,747 + RR42_RS24800 0.59 -0.5
902,773 - RR42_RS24800 0.64 -0.9
903,013 - -1.3
903,013 - -1.0
903,405 + RR42_RS24805 0.36 -0.6
903,439 - RR42_RS24805 0.39 -0.6
903,632 - RR42_RS24805 0.55 -1.2
903,679 - RR42_RS24805 0.59 -0.4
903,714 + RR42_RS24805 0.61 +1.0
903,715 - RR42_RS24805 0.62 +0.5
903,715 - RR42_RS24805 0.62 +1.4
903,943 - RR42_RS24805 0.80 -0.2

Or see this region's nucleotide sequence