Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23705

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23700 and RR42_RS23705 are separated by 51 nucleotidesRR42_RS23705 and RR42_RS23710 are separated by 40 nucleotides RR42_RS23700: RR42_RS23700 - acyl-CoA dehydrogenase, at 643,022 to 644,173 _RS23700 RR42_RS23705: RR42_RS23705 - cyclohexanecarboxylate--CoA ligase, at 644,225 to 645,877 _RS23705 RR42_RS23710: RR42_RS23710 - enoyl-CoA hydratase, at 645,918 to 646,667 _RS23710 Position (kb) 644 645 646Strain fitness (log2 ratio) -2 -1 0 1 2at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.275 kb on - strand, within RR42_RS23700at 643.275 kb on - strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.461 kb on - strand, within RR42_RS23700at 643.767 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 644.001 kb on - strand, within RR42_RS23700at 644.001 kb on - strand, within RR42_RS23700at 644.229 kb on - strandat 644.396 kb on + strand, within RR42_RS23705at 644.514 kb on - strand, within RR42_RS23705at 644.648 kb on + strand, within RR42_RS23705at 644.648 kb on + strand, within RR42_RS23705at 644.649 kb on - strand, within RR42_RS23705at 644.816 kb on + strand, within RR42_RS23705at 644.816 kb on + strand, within RR42_RS23705at 644.817 kb on - strand, within RR42_RS23705at 644.817 kb on - strand, within RR42_RS23705at 644.817 kb on - strand, within RR42_RS23705at 644.891 kb on + strand, within RR42_RS23705at 644.892 kb on - strand, within RR42_RS23705at 644.969 kb on + strand, within RR42_RS23705at 644.969 kb on + strand, within RR42_RS23705at 644.969 kb on + strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 645.043 kb on - strand, within RR42_RS23705at 645.590 kb on + strand, within RR42_RS23705at 645.591 kb on - strand, within RR42_RS23705at 645.746 kb on + strandat 645.746 kb on + strandat 645.746 kb on + strandat 645.746 kb on + strandat 645.746 kb on + strandat 645.747 kb on - strandat 645.747 kb on - strandat 645.907 kb on + strandat 646.113 kb on + strand, within RR42_RS23710at 646.113 kb on + strand, within RR42_RS23710at 646.114 kb on - strand, within RR42_RS23710at 646.114 kb on - strand, within RR42_RS23710at 646.115 kb on + strand, within RR42_RS23710at 646.115 kb on + strand, within RR42_RS23710at 646.115 kb on + strand, within RR42_RS23710at 646.115 kb on + strand, within RR42_RS23710at 646.115 kb on + strand, within RR42_RS23710at 646.115 kb on + strand, within RR42_RS23710at 646.137 kb on + strand, within RR42_RS23710at 646.137 kb on + strand, within RR42_RS23710at 646.138 kb on - strand, within RR42_RS23710at 646.138 kb on - strand, within RR42_RS23710at 646.138 kb on - strand, within RR42_RS23710at 646.420 kb on + strand, within RR42_RS23710at 646.420 kb on + strand, within RR42_RS23710at 646.666 kb on - strandat 646.789 kb on + strandat 646.789 kb on + strandat 646.790 kb on - strandat 646.792 kb on + strandat 646.793 kb on - strandat 646.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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643,274 + RR42_RS23700 0.22 -0.7
643,274 + RR42_RS23700 0.22 -0.1
643,274 + RR42_RS23700 0.22 +0.0
643,274 + RR42_RS23700 0.22 +0.5
643,274 + RR42_RS23700 0.22 -0.7
643,274 + RR42_RS23700 0.22 -0.5
643,275 - RR42_RS23700 0.22 -0.1
643,275 - RR42_RS23700 0.22 -0.0
643,460 + RR42_RS23700 0.38 -0.6
643,460 + RR42_RS23700 0.38 -0.1
643,460 + RR42_RS23700 0.38 -1.2
643,460 + RR42_RS23700 0.38 -0.2
643,461 - RR42_RS23700 0.38 +0.1
643,767 + RR42_RS23700 0.65 +0.8
643,808 + RR42_RS23700 0.68 +0.5
643,808 + RR42_RS23700 0.68 -0.7
643,808 + RR42_RS23700 0.68 -0.4
643,808 + RR42_RS23700 0.68 -0.5
643,809 - RR42_RS23700 0.68 -1.1
643,809 - RR42_RS23700 0.68 -0.7
643,809 - RR42_RS23700 0.68 -1.0
644,001 - RR42_RS23700 0.85 +0.0
644,001 - RR42_RS23700 0.85 -0.9
644,229 - +0.2
644,396 + RR42_RS23705 0.10 -0.7
644,514 - RR42_RS23705 0.17 +1.0
644,648 + RR42_RS23705 0.26 +1.3
644,648 + RR42_RS23705 0.26 -0.1
644,649 - RR42_RS23705 0.26 -0.9
644,816 + RR42_RS23705 0.36 -0.4
644,816 + RR42_RS23705 0.36 -0.2
644,817 - RR42_RS23705 0.36 +0.6
644,817 - RR42_RS23705 0.36 -0.5
644,817 - RR42_RS23705 0.36 -0.3
644,891 + RR42_RS23705 0.40 -1.6
644,892 - RR42_RS23705 0.40 -0.7
644,969 + RR42_RS23705 0.45 -1.3
644,969 + RR42_RS23705 0.45 -0.0
644,969 + RR42_RS23705 0.45 -0.7
644,970 - RR42_RS23705 0.45 -0.2
644,970 - RR42_RS23705 0.45 -0.8
644,970 - RR42_RS23705 0.45 -0.1
644,970 - RR42_RS23705 0.45 -1.8
645,043 - RR42_RS23705 0.49 -0.3
645,590 + RR42_RS23705 0.83 -0.2
645,591 - RR42_RS23705 0.83 -0.3
645,746 + +0.1
645,746 + -0.7
645,746 + -0.9
645,746 + -1.3
645,746 + -1.5
645,747 - +2.0
645,747 - -0.8
645,907 + -2.4
646,113 + RR42_RS23710 0.26 -0.6
646,113 + RR42_RS23710 0.26 -1.5
646,114 - RR42_RS23710 0.26 +0.0
646,114 - RR42_RS23710 0.26 +1.1
646,115 + RR42_RS23710 0.26 -0.9
646,115 + RR42_RS23710 0.26 +0.8
646,115 + RR42_RS23710 0.26 -0.3
646,115 + RR42_RS23710 0.26 +0.0
646,115 + RR42_RS23710 0.26 +0.2
646,115 + RR42_RS23710 0.26 +0.3
646,137 + RR42_RS23710 0.29 -0.2
646,137 + RR42_RS23710 0.29 +0.9
646,138 - RR42_RS23710 0.29 -1.6
646,138 - RR42_RS23710 0.29 -1.2
646,138 - RR42_RS23710 0.29 -1.3
646,420 + RR42_RS23710 0.67 -1.3
646,420 + RR42_RS23710 0.67 -0.8
646,666 - -1.6
646,789 + +0.0
646,789 + +0.2
646,790 - -0.3
646,792 + -0.2
646,793 - +0.0
646,803 + +2.2

Or see this region's nucleotide sequence