Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22925 and RR42_RS22930 overlap by 1 nucleotides RR42_RS22930 and RR42_RS22935 are separated by 53 nucleotides
RR42_RS22925: RR42_RS22925 - RND transporter, at 475,120 to 476,193
_RS22925
RR42_RS22930: RR42_RS22930 - cytochrome C peroxidase, at 476,193 to 479,342
_RS22930
RR42_RS22935: RR42_RS22935 - metal transporter, at 479,396 to 480,613
_RS22935
Position (kb) 476
477
478
479
480 Strain fitness (log2 ratio) -2
-1
0
1 at 475.199 kb on + strand at 475.200 kb on - strand at 475.302 kb on - strand, within RR42_RS22925 at 475.302 kb on - strand, within RR42_RS22925 at 475.318 kb on + strand, within RR42_RS22925 at 475.336 kb on + strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 475.337 kb on - strand, within RR42_RS22925 at 476.014 kb on + strand, within RR42_RS22925 at 476.284 kb on - strand at 476.454 kb on + strand at 476.503 kb on - strand at 476.503 kb on - strand at 476.503 kb on - strand at 476.707 kb on + strand, within RR42_RS22930 at 476.708 kb on - strand, within RR42_RS22930 at 476.745 kb on + strand, within RR42_RS22930 at 476.789 kb on + strand, within RR42_RS22930 at 477.168 kb on + strand, within RR42_RS22930 at 477.169 kb on - strand, within RR42_RS22930 at 477.256 kb on - strand, within RR42_RS22930 at 477.342 kb on + strand, within RR42_RS22930 at 477.343 kb on - strand, within RR42_RS22930 at 477.343 kb on - strand, within RR42_RS22930 at 477.723 kb on + strand, within RR42_RS22930 at 477.837 kb on + strand, within RR42_RS22930 at 477.837 kb on + strand, within RR42_RS22930 at 477.837 kb on + strand, within RR42_RS22930 at 477.866 kb on + strand, within RR42_RS22930 at 477.866 kb on + strand, within RR42_RS22930 at 478.155 kb on + strand, within RR42_RS22930 at 478.156 kb on - strand, within RR42_RS22930 at 478.156 kb on - strand, within RR42_RS22930 at 478.156 kb on - strand, within RR42_RS22930 at 478.500 kb on - strand, within RR42_RS22930 at 478.886 kb on + strand, within RR42_RS22930 at 478.886 kb on + strand, within RR42_RS22930 at 478.887 kb on - strand, within RR42_RS22930 at 478.938 kb on + strand, within RR42_RS22930 at 479.024 kb on + strand, within RR42_RS22930 at 479.025 kb on - strand, within RR42_RS22930 at 479.866 kb on - strand, within RR42_RS22935 at 480.080 kb on + strand, within RR42_RS22935 at 480.080 kb on + strand, within RR42_RS22935 at 480.081 kb on - strand, within RR42_RS22935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 475,199 + +0.0 475,200 - -0.2 475,302 - RR42_RS22925 0.17 +0.0 475,302 - RR42_RS22925 0.17 +0.2 475,318 + RR42_RS22925 0.18 -0.9 475,336 + RR42_RS22925 0.20 +0.3 475,337 - RR42_RS22925 0.20 +0.8 475,337 - RR42_RS22925 0.20 -0.5 476,014 + RR42_RS22925 0.83 -0.0 476,284 - -0.3 476,454 + +1.4 476,503 - -0.3 476,503 - -0.2 476,503 - -0.6 476,707 + RR42_RS22930 0.16 +0.7 476,708 - RR42_RS22930 0.16 -0.2 476,745 + RR42_RS22930 0.18 -0.3 476,789 + RR42_RS22930 0.19 -0.9 477,168 + RR42_RS22930 0.31 +0.1 477,169 - RR42_RS22930 0.31 +1.0 477,256 - RR42_RS22930 0.34 -0.2 477,342 + RR42_RS22930 0.36 -0.1 477,343 - RR42_RS22930 0.37 -1.3 477,343 - RR42_RS22930 0.37 -0.1 477,723 + RR42_RS22930 0.49 -1.3 477,837 + RR42_RS22930 0.52 -0.9 477,837 + RR42_RS22930 0.52 +0.0 477,837 + RR42_RS22930 0.52 -1.7 477,866 + RR42_RS22930 0.53 -1.3 477,866 + RR42_RS22930 0.53 -1.2 478,155 + RR42_RS22930 0.62 -1.2 478,156 - RR42_RS22930 0.62 +0.5 478,156 - RR42_RS22930 0.62 +0.5 478,156 - RR42_RS22930 0.62 -0.1 478,500 - RR42_RS22930 0.73 -0.8 478,886 + RR42_RS22930 0.85 +0.1 478,886 + RR42_RS22930 0.85 -0.0 478,887 - RR42_RS22930 0.86 -2.6 478,938 + RR42_RS22930 0.87 -0.7 479,024 + RR42_RS22930 0.90 -2.0 479,025 - RR42_RS22930 0.90 -1.4 479,866 - RR42_RS22935 0.39 -0.5 480,080 + RR42_RS22935 0.56 -0.3 480,080 + RR42_RS22935 0.56 -0.8 480,081 - RR42_RS22935 0.56 -1.0
Or see this region's nucleotide sequence