Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22010 and RR42_RS22015 are separated by 25 nucleotides RR42_RS22015 and RR42_RS22020 are separated by 15 nucleotides RR42_RS22020 and RR42_RS22025 are separated by 256 nucleotides
RR42_RS22010: RR42_RS22010 - histidine kinase, at 269,587 to 271,233
_RS22010
RR42_RS22015: RR42_RS22015 - histidine kinase, at 271,259 to 273,655
_RS22015
RR42_RS22020: RR42_RS22020 - hypothetical protein, at 273,671 to 273,856
_RS22020
RR42_RS22025: RR42_RS22025 - AraC family transcriptional regulator, at 274,113 to 275,090
_RS22025
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 270.275 kb on + strand, within RR42_RS22010 at 270.535 kb on + strand, within RR42_RS22010 at 270.535 kb on + strand, within RR42_RS22010 at 270.535 kb on + strand, within RR42_RS22010 at 270.628 kb on - strand, within RR42_RS22010 at 270.628 kb on - strand, within RR42_RS22010 at 270.710 kb on - strand, within RR42_RS22010 at 270.988 kb on + strand, within RR42_RS22010 at 271.020 kb on + strand, within RR42_RS22010 at 271.090 kb on + strand at 271.091 kb on - strand at 271.168 kb on + strand at 271.168 kb on + strand at 271.168 kb on + strand at 271.231 kb on + strand at 272.790 kb on - strand, within RR42_RS22015 at 272.802 kb on + strand, within RR42_RS22015 at 272.803 kb on - strand, within RR42_RS22015 at 272.803 kb on - strand, within RR42_RS22015 at 272.960 kb on - strand, within RR42_RS22015 at 273.244 kb on - strand, within RR42_RS22015 at 273.244 kb on - strand, within RR42_RS22015 at 273.414 kb on - strand, within RR42_RS22015 at 273.846 kb on + strand at 273.847 kb on - strand at 273.902 kb on + strand at 273.916 kb on - strand at 273.936 kb on - strand at 274.017 kb on + strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.162 kb on + strand at 274.275 kb on - strand, within RR42_RS22025 at 274.275 kb on - strand, within RR42_RS22025 at 274.279 kb on - strand, within RR42_RS22025 at 274.654 kb on + strand, within RR42_RS22025 at 274.654 kb on + strand, within RR42_RS22025 at 274.655 kb on - strand, within RR42_RS22025 at 274.655 kb on - strand, within RR42_RS22025
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 270,275 + RR42_RS22010 0.42 -0.1 270,535 + RR42_RS22010 0.58 -1.0 270,535 + RR42_RS22010 0.58 +0.4 270,535 + RR42_RS22010 0.58 -0.8 270,628 - RR42_RS22010 0.63 +1.0 270,628 - RR42_RS22010 0.63 +1.2 270,710 - RR42_RS22010 0.68 +0.5 270,988 + RR42_RS22010 0.85 +0.3 271,020 + RR42_RS22010 0.87 -0.1 271,090 + -0.2 271,091 - +0.6 271,168 + -0.8 271,168 + +1.0 271,168 + -0.5 271,231 + +0.0 272,790 - RR42_RS22015 0.64 -1.0 272,802 + RR42_RS22015 0.64 +0.2 272,803 - RR42_RS22015 0.64 -0.1 272,803 - RR42_RS22015 0.64 -1.1 272,960 - RR42_RS22015 0.71 -0.9 273,244 - RR42_RS22015 0.83 +0.6 273,244 - RR42_RS22015 0.83 -1.2 273,414 - RR42_RS22015 0.90 -2.4 273,846 + +0.9 273,847 - +0.4 273,902 + -0.7 273,916 - +0.9 273,936 - +1.6 274,017 + -0.2 274,018 - +0.6 274,018 - -0.4 274,162 + -0.3 274,275 - RR42_RS22025 0.17 +0.8 274,275 - RR42_RS22025 0.17 +0.4 274,279 - RR42_RS22025 0.17 +0.3 274,654 + RR42_RS22025 0.55 -0.2 274,654 + RR42_RS22025 0.55 +0.7 274,655 - RR42_RS22025 0.55 +0.5 274,655 - RR42_RS22025 0.55 -0.2
Or see this region's nucleotide sequence