Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20275

Experiment: R2A with Cephalothin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cephalothin 0.25 mg/ml
4,384,912	+				+0.6
4,384,912	+				+0.3
4,385,185	+		RR42_RS20270	0.41	-0.6
4,385,185	+		RR42_RS20270	0.41	+0.7
4,385,186	-		RR42_RS20270	0.41	+0.5
4,385,186	-		RR42_RS20270	0.41	-0.7
4,385,216	-		RR42_RS20270	0.44	+0.8
4,385,216	-		RR42_RS20270	0.44	-0.6
4,385,326	+		RR42_RS20270	0.57	+0.0
4,385,407	+		RR42_RS20270	0.66	-0.5
4,385,407	+		RR42_RS20270	0.66	-0.2
4,385,408	-		RR42_RS20270	0.66	-0.0
4,385,408	-		RR42_RS20270	0.66	+0.1
4,385,408	-		RR42_RS20270	0.66	+0.5
4,385,408	-		RR42_RS20270	0.66	+0.1
4,385,408	-		RR42_RS20270	0.66	+1.1
4,385,411	+		RR42_RS20270	0.66	+0.7
4,385,411	+		RR42_RS20270	0.66	+0.0
4,385,412	-		RR42_RS20270	0.66	+0.7
4,385,412	-		RR42_RS20270	0.66	+0.7
4,385,412	-		RR42_RS20270	0.66	-0.5
4,385,425	+		RR42_RS20270	0.68	-0.3
4,385,425	+		RR42_RS20270	0.68	-0.2
4,385,426	-		RR42_RS20270	0.68	+0.0
4,385,426	-		RR42_RS20270	0.68	+0.1
4,385,426	-		RR42_RS20270	0.68	+0.7
4,385,506	+		RR42_RS20270	0.77	+0.9
4,385,635	+				+0.4
4,385,635	+				+0.2
4,385,635	+				+0.5
4,385,636	-				+0.5
4,385,636	-				-2.5
4,385,636	-				-0.4
4,385,665	-				+0.3
4,385,665	-				+0.4
4,385,665	-				-0.5
4,385,847	+				+1.3
4,385,847	+				-0.4
4,385,848	-				-0.2
4,385,862	+				+0.1
4,385,862	+				+1.5
4,385,862	+				+0.6
4,385,890	-				+0.0
4,385,890	-				+0.3
4,385,970	+				-2.2
4,385,971	-				+0.3
4,386,018	+		RR42_RS20275	0.11	+0.3
4,386,018	+		RR42_RS20275	0.11	+0.2
4,386,019	-		RR42_RS20275	0.11	+0.3
4,386,019	-		RR42_RS20275	0.11	+1.3
4,386,019	-		RR42_RS20275	0.11	-0.5
4,386,055	-		RR42_RS20275	0.14	+1.0
4,386,066	+		RR42_RS20275	0.15	+0.4
4,386,067	-		RR42_RS20275	0.15	-0.1
4,386,067	-		RR42_RS20275	0.15	+0.6
4,386,067	-		RR42_RS20275	0.15	-0.5
4,386,150	+		RR42_RS20275	0.22	+1.3
4,386,151	-		RR42_RS20275	0.22	+0.1
4,386,151	-		RR42_RS20275	0.22	+0.8
4,386,154	+		RR42_RS20275	0.22	+0.5
4,386,154	+		RR42_RS20275	0.22	+1.0
4,386,155	-		RR42_RS20275	0.22	+0.1
4,386,258	+		RR42_RS20275	0.31	+0.5
4,386,258	+		RR42_RS20275	0.31	-0.0
4,386,570	+		RR42_RS20275	0.56	+0.8
4,386,571	-		RR42_RS20275	0.56	+0.1
4,386,571	-		RR42_RS20275	0.56	+1.0
4,386,628	+		RR42_RS20275	0.61	+0.2
4,386,654	+		RR42_RS20275	0.63	+0.7
4,386,654	+		RR42_RS20275	0.63	+0.1
4,386,654	+		RR42_RS20275	0.63	-0.9
4,386,654	+		RR42_RS20275	0.63	+0.0
4,386,654	+		RR42_RS20275	0.63	+0.3
4,386,654	+		RR42_RS20275	0.63	+0.8
4,386,655	-		RR42_RS20275	0.63	+1.2
4,386,660	+		RR42_RS20275	0.64	+0.5
4,386,661	-		RR42_RS20275	0.64	+0.5
4,386,672	+		RR42_RS20275	0.65	+0.5
4,386,673	-		RR42_RS20275	0.65	-1.7
4,386,726	+		RR42_RS20275	0.69	+0.0
4,386,726	+		RR42_RS20275	0.69	+0.1
4,386,969	+		RR42_RS20275	0.89	-0.0
4,386,993	+				+0.8
4,386,994	-				+0.3
4,387,109	+				+0.6
4,387,110	-				-0.6
4,387,146	+				-0.6
4,387,147	-				-0.1
4,387,284	-		RR42_RS20280	0.13	-1.6
4,387,284	-		RR42_RS20280	0.13	+0.6
4,387,344	-		RR42_RS20280	0.21	-0.5
4,387,545	-		RR42_RS20280	0.49	-0.2
4,387,545	-		RR42_RS20280	0.49	-0.1
4,387,665	-		RR42_RS20280	0.65	+1.2
4,387,965	+				-0.3
4,387,966	-				+0.4
4,387,966	-				-0.1
4,387,967	+				+0.1
4,387,967	+				-2.6
4,387,967	+				-1.6
4,387,967	+				-0.0
4,387,968	-				+0.2
4,387,996	+				-0.5
4,387,997	-				-0.5
4,388,007	-		RR42_RS20285	0.10	+0.8
4,388,042	-		RR42_RS20285	0.15	-1.6