Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19060

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19050 and RR42_RS19055 are separated by 214 nucleotidesRR42_RS19055 and RR42_RS19060 are separated by 14 nucleotidesRR42_RS19060 and RR42_RS19065 are separated by 221 nucleotides RR42_RS19050: RR42_RS19050 - diaminopimelate decarboxylase, at 4,127,618 to 4,128,886 _RS19050 RR42_RS19055: RR42_RS19055 - sulfite oxidase, at 4,129,101 to 4,129,781 _RS19055 RR42_RS19060: RR42_RS19060 - sulfoxide reductase catalytic subunit YedY, at 4,129,796 to 4,130,797 _RS19060 RR42_RS19065: RR42_RS19065 - transcriptional regulator, at 4,131,019 to 4,131,855 _RS19065 Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4128.884 kb on + strandat 4129.089 kb on + strandat 4129.089 kb on + strandat 4129.089 kb on + strandat 4129.090 kb on - strandat 4129.090 kb on - strandat 4129.090 kb on - strandat 4129.102 kb on + strandat 4129.103 kb on - strandat 4129.103 kb on - strandat 4129.103 kb on - strandat 4129.103 kb on - strandat 4129.183 kb on + strand, within RR42_RS19055at 4129.191 kb on + strand, within RR42_RS19055at 4129.220 kb on + strand, within RR42_RS19055at 4129.220 kb on + strand, within RR42_RS19055at 4129.220 kb on + strand, within RR42_RS19055at 4129.220 kb on + strand, within RR42_RS19055at 4129.221 kb on - strand, within RR42_RS19055at 4129.231 kb on + strand, within RR42_RS19055at 4129.231 kb on + strand, within RR42_RS19055at 4129.231 kb on + strand, within RR42_RS19055at 4129.231 kb on + strand, within RR42_RS19055at 4129.231 kb on + strand, within RR42_RS19055at 4129.232 kb on - strand, within RR42_RS19055at 4129.232 kb on - strand, within RR42_RS19055at 4129.232 kb on - strand, within RR42_RS19055at 4129.261 kb on + strand, within RR42_RS19055at 4129.261 kb on + strand, within RR42_RS19055at 4129.261 kb on + strand, within RR42_RS19055at 4129.261 kb on + strand, within RR42_RS19055at 4129.300 kb on - strand, within RR42_RS19055at 4129.408 kb on + strand, within RR42_RS19055at 4129.408 kb on + strand, within RR42_RS19055at 4129.408 kb on + strand, within RR42_RS19055at 4129.408 kb on + strand, within RR42_RS19055at 4129.408 kb on + strand, within RR42_RS19055at 4129.409 kb on - strand, within RR42_RS19055at 4129.465 kb on + strand, within RR42_RS19055at 4129.465 kb on + strand, within RR42_RS19055at 4129.465 kb on + strand, within RR42_RS19055at 4129.827 kb on + strandat 4129.992 kb on + strand, within RR42_RS19060at 4130.059 kb on + strand, within RR42_RS19060at 4130.059 kb on + strand, within RR42_RS19060at 4130.059 kb on + strand, within RR42_RS19060at 4130.083 kb on - strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.143 kb on - strand, within RR42_RS19060at 4130.205 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.278 kb on - strand, within RR42_RS19060at 4130.278 kb on - strand, within RR42_RS19060at 4130.278 kb on - strand, within RR42_RS19060at 4130.380 kb on - strand, within RR42_RS19060at 4130.427 kb on + strand, within RR42_RS19060at 4130.427 kb on + strand, within RR42_RS19060at 4130.427 kb on + strand, within RR42_RS19060at 4130.428 kb on - strand, within RR42_RS19060at 4130.428 kb on - strand, within RR42_RS19060at 4130.533 kb on - strand, within RR42_RS19060at 4130.533 kb on - strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.545 kb on - strand, within RR42_RS19060at 4130.545 kb on - strand, within RR42_RS19060at 4130.562 kb on + strand, within RR42_RS19060at 4130.563 kb on - strand, within RR42_RS19060at 4130.563 kb on - strand, within RR42_RS19060at 4130.589 kb on + strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.821 kb on - strandat 4130.958 kb on + strandat 4130.958 kb on + strandat 4130.958 kb on + strandat 4130.959 kb on - strandat 4130.959 kb on - strandat 4130.959 kb on - strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.963 kb on - strandat 4130.963 kb on - strandat 4131.032 kb on + strandat 4131.033 kb on - strandat 4131.033 kb on - strandat 4131.041 kb on + strandat 4131.116 kb on - strand, within RR42_RS19065at 4131.116 kb on - strand, within RR42_RS19065at 4131.122 kb on + strand, within RR42_RS19065at 4131.123 kb on - strand, within RR42_RS19065at 4131.123 kb on - strand, within RR42_RS19065at 4131.135 kb on + strand, within RR42_RS19065at 4131.136 kb on - strand, within RR42_RS19065at 4131.136 kb on - strand, within RR42_RS19065at 4131.136 kb on - strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.264 kb on - strand, within RR42_RS19065at 4131.264 kb on - strand, within RR42_RS19065at 4131.376 kb on + strand, within RR42_RS19065at 4131.443 kb on + strand, within RR42_RS19065at 4131.443 kb on + strand, within RR42_RS19065at 4131.443 kb on + strand, within RR42_RS19065at 4131.444 kb on - strand, within RR42_RS19065at 4131.633 kb on + strand, within RR42_RS19065at 4131.633 kb on + strand, within RR42_RS19065at 4131.633 kb on + strand, within RR42_RS19065at 4131.634 kb on - strand, within RR42_RS19065at 4131.770 kb on + strand, within RR42_RS19065at 4131.770 kb on + strand, within RR42_RS19065at 4131.770 kb on + strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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4,128,884 + +1.3
4,129,089 + +0.1
4,129,089 + +0.2
4,129,089 + +0.9
4,129,090 - +0.4
4,129,090 - +0.3
4,129,090 - +0.6
4,129,102 + +0.8
4,129,103 - +0.0
4,129,103 - +2.8
4,129,103 - +0.8
4,129,103 - +0.5
4,129,183 + RR42_RS19055 0.12 +0.3
4,129,191 + RR42_RS19055 0.13 -0.8
4,129,220 + RR42_RS19055 0.17 +0.2
4,129,220 + RR42_RS19055 0.17 -0.8
4,129,220 + RR42_RS19055 0.17 +0.5
4,129,220 + RR42_RS19055 0.17 +1.1
4,129,221 - RR42_RS19055 0.18 -0.2
4,129,231 + RR42_RS19055 0.19 -0.8
4,129,231 + RR42_RS19055 0.19 +2.1
4,129,231 + RR42_RS19055 0.19 -0.4
4,129,231 + RR42_RS19055 0.19 +0.1
4,129,231 + RR42_RS19055 0.19 -0.3
4,129,232 - RR42_RS19055 0.19 +0.4
4,129,232 - RR42_RS19055 0.19 +0.6
4,129,232 - RR42_RS19055 0.19 +1.1
4,129,261 + RR42_RS19055 0.23 -0.2
4,129,261 + RR42_RS19055 0.23 -0.2
4,129,261 + RR42_RS19055 0.23 +0.2
4,129,261 + RR42_RS19055 0.23 -0.0
4,129,300 - RR42_RS19055 0.29 +0.4
4,129,408 + RR42_RS19055 0.45 +0.3
4,129,408 + RR42_RS19055 0.45 +0.1
4,129,408 + RR42_RS19055 0.45 -0.1
4,129,408 + RR42_RS19055 0.45 +0.0
4,129,408 + RR42_RS19055 0.45 -0.1
4,129,409 - RR42_RS19055 0.45 -0.5
4,129,465 + RR42_RS19055 0.53 +0.3
4,129,465 + RR42_RS19055 0.53 +0.7
4,129,465 + RR42_RS19055 0.53 -0.8
4,129,827 + -0.8
4,129,992 + RR42_RS19060 0.20 +1.1
4,130,059 + RR42_RS19060 0.26 +0.5
4,130,059 + RR42_RS19060 0.26 +0.1
4,130,059 + RR42_RS19060 0.26 +0.7
4,130,083 - RR42_RS19060 0.29 -0.8
4,130,142 + RR42_RS19060 0.35 +0.8
4,130,142 + RR42_RS19060 0.35 -0.5
4,130,142 + RR42_RS19060 0.35 -0.9
4,130,142 + RR42_RS19060 0.35 -0.2
4,130,142 + RR42_RS19060 0.35 -0.5
4,130,142 + RR42_RS19060 0.35 -0.1
4,130,142 + RR42_RS19060 0.35 -0.4
4,130,143 - RR42_RS19060 0.35 -0.9
4,130,205 + RR42_RS19060 0.41 +0.3
4,130,277 + RR42_RS19060 0.48 +0.6
4,130,277 + RR42_RS19060 0.48 +0.1
4,130,277 + RR42_RS19060 0.48 +0.7
4,130,277 + RR42_RS19060 0.48 +0.7
4,130,277 + RR42_RS19060 0.48 -0.1
4,130,277 + RR42_RS19060 0.48 +0.1
4,130,277 + RR42_RS19060 0.48 -0.4
4,130,277 + RR42_RS19060 0.48 +0.6
4,130,278 - RR42_RS19060 0.48 +0.4
4,130,278 - RR42_RS19060 0.48 +0.6
4,130,278 - RR42_RS19060 0.48 -0.0
4,130,380 - RR42_RS19060 0.58 +0.1
4,130,427 + RR42_RS19060 0.63 +0.5
4,130,427 + RR42_RS19060 0.63 -0.2
4,130,427 + RR42_RS19060 0.63 +0.1
4,130,428 - RR42_RS19060 0.63 -0.2
4,130,428 - RR42_RS19060 0.63 -1.3
4,130,533 - RR42_RS19060 0.74 +0.2
4,130,533 - RR42_RS19060 0.74 -0.2
4,130,535 + RR42_RS19060 0.74 +1.0
4,130,535 + RR42_RS19060 0.74 +0.8
4,130,535 + RR42_RS19060 0.74 -0.1
4,130,535 + RR42_RS19060 0.74 -0.5
4,130,535 + RR42_RS19060 0.74 +1.2
4,130,535 + RR42_RS19060 0.74 -0.2
4,130,536 - RR42_RS19060 0.74 +0.8
4,130,536 - RR42_RS19060 0.74 +0.5
4,130,536 - RR42_RS19060 0.74 -0.3
4,130,536 - RR42_RS19060 0.74 +0.9
4,130,545 - RR42_RS19060 0.75 +0.2
4,130,545 - RR42_RS19060 0.75 +0.1
4,130,562 + RR42_RS19060 0.76 +0.1
4,130,563 - RR42_RS19060 0.77 -1.3
4,130,563 - RR42_RS19060 0.77 -0.4
4,130,589 + RR42_RS19060 0.79 +0.9
4,130,590 - RR42_RS19060 0.79 +1.2
4,130,590 - RR42_RS19060 0.79 +0.0
4,130,590 - RR42_RS19060 0.79 +2.4
4,130,590 - RR42_RS19060 0.79 +1.4
4,130,590 - RR42_RS19060 0.79 -0.0
4,130,590 - RR42_RS19060 0.79 +0.2
4,130,590 - RR42_RS19060 0.79 +1.9
4,130,590 - RR42_RS19060 0.79 -0.4
4,130,821 - -1.4
4,130,958 + +0.1
4,130,958 + -0.9
4,130,958 + +0.2
4,130,959 - -0.8
4,130,959 - +0.2
4,130,959 - +0.6
4,130,962 + +0.1
4,130,962 + -0.3
4,130,962 + +0.4
4,130,962 + +0.4
4,130,962 + -2.7
4,130,962 + +0.2
4,130,963 - -0.3
4,130,963 - -0.8
4,131,032 + +0.8
4,131,033 - -1.4
4,131,033 - -0.6
4,131,041 + -1.0
4,131,116 - RR42_RS19065 0.12 -1.1
4,131,116 - RR42_RS19065 0.12 -0.6
4,131,122 + RR42_RS19065 0.12 -0.0
4,131,123 - RR42_RS19065 0.12 -1.1
4,131,123 - RR42_RS19065 0.12 +0.7
4,131,135 + RR42_RS19065 0.14 +0.8
4,131,136 - RR42_RS19065 0.14 -0.1
4,131,136 - RR42_RS19065 0.14 +0.9
4,131,136 - RR42_RS19065 0.14 +0.8
4,131,263 + RR42_RS19065 0.29 -0.2
4,131,263 + RR42_RS19065 0.29 +0.2
4,131,263 + RR42_RS19065 0.29 +0.7
4,131,263 + RR42_RS19065 0.29 -0.2
4,131,263 + RR42_RS19065 0.29 +1.8
4,131,264 - RR42_RS19065 0.29 -0.0
4,131,264 - RR42_RS19065 0.29 -0.9
4,131,376 + RR42_RS19065 0.43 -1.8
4,131,443 + RR42_RS19065 0.51 -0.2
4,131,443 + RR42_RS19065 0.51 -0.9
4,131,443 + RR42_RS19065 0.51 -1.1
4,131,444 - RR42_RS19065 0.51 -0.0
4,131,633 + RR42_RS19065 0.73 +1.6
4,131,633 + RR42_RS19065 0.73 -0.1
4,131,633 + RR42_RS19065 0.73 -0.2
4,131,634 - RR42_RS19065 0.73 -0.5
4,131,770 + RR42_RS19065 0.90 -0.6
4,131,770 + RR42_RS19065 0.90 +0.1
4,131,770 + RR42_RS19065 0.90 -1.0
4,131,771 - RR42_RS19065 0.90 -0.4
4,131,771 - RR42_RS19065 0.90 +0.1
4,131,771 - RR42_RS19065 0.90 -0.4
4,131,771 - RR42_RS19065 0.90 +0.1
4,131,771 - RR42_RS19065 0.90 +0.2
4,131,771 - RR42_RS19065 0.90 -0.8
4,131,771 - RR42_RS19065 0.90 +0.7
4,131,771 - RR42_RS19065 0.90 +0.2

Or see this region's nucleotide sequence