Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18805 and RR42_RS18810 are separated by 63 nucleotides RR42_RS18810 and RR42_RS18815 are separated by 258 nucleotides RR42_RS18815 and RR42_RS18820 are separated by 37 nucleotides
RR42_RS18805: RR42_RS18805 - peptidase, at 4,078,632 to 4,079,129
_RS18805
RR42_RS18810: RR42_RS18810 - stringent starvation protein A, at 4,079,193 to 4,079,804
_RS18810
RR42_RS18815: RR42_RS18815 - cytochrome C, at 4,080,063 to 4,080,806
_RS18815
RR42_RS18820: RR42_RS18820 - cytochrome B, at 4,080,844 to 4,082,247
_RS18820
Position (kb)
4080
4081 Strain fitness (log2 ratio)
-1
0
1 at 4079.086 kb on + strand at 4079.086 kb on + strand at 4079.087 kb on - strand at 4079.087 kb on - strand at 4079.104 kb on + strand at 4079.105 kb on - strand at 4079.865 kb on - strand at 4079.899 kb on + strand at 4079.919 kb on + strand at 4079.920 kb on - strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4080.065 kb on - strand at 4080.082 kb on + strand at 4080.223 kb on + strand, within RR42_RS18815 at 4080.419 kb on + strand, within RR42_RS18815 at 4080.419 kb on + strand, within RR42_RS18815 at 4080.428 kb on - strand, within RR42_RS18815 at 4080.616 kb on + strand, within RR42_RS18815 at 4080.652 kb on + strand, within RR42_RS18815 at 4080.833 kb on + strand at 4080.834 kb on - strand at 4080.933 kb on - strand at 4080.985 kb on + strand, within RR42_RS18820 at 4081.314 kb on - strand, within RR42_RS18820 at 4081.314 kb on - strand, within RR42_RS18820 at 4081.484 kb on + strand, within RR42_RS18820 at 4081.484 kb on + strand, within RR42_RS18820 at 4081.487 kb on + strand, within RR42_RS18820 at 4081.683 kb on - strand, within RR42_RS18820 at 4081.794 kb on - strand, within RR42_RS18820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 4,079,086 + +0.5 4,079,086 + +1.0 4,079,087 - +0.8 4,079,087 - +0.4 4,079,104 + -0.3 4,079,105 - +0.6 4,079,865 - +0.2 4,079,899 + -0.2 4,079,919 + -1.0 4,079,920 - +0.6 4,079,943 - +0.4 4,079,943 - +0.5 4,080,065 - -0.5 4,080,082 + +0.1 4,080,223 + RR42_RS18815 0.22 -0.6 4,080,419 + RR42_RS18815 0.48 -1.2 4,080,419 + RR42_RS18815 0.48 -0.8 4,080,428 - RR42_RS18815 0.49 -0.7 4,080,616 + RR42_RS18815 0.74 -1.1 4,080,652 + RR42_RS18815 0.79 -0.5 4,080,833 + -1.3 4,080,834 - +0.1 4,080,933 - -0.5 4,080,985 + RR42_RS18820 0.10 -0.7 4,081,314 - RR42_RS18820 0.33 -0.6 4,081,314 - RR42_RS18820 0.33 +0.6 4,081,484 + RR42_RS18820 0.46 -1.0 4,081,484 + RR42_RS18820 0.46 -0.1 4,081,487 + RR42_RS18820 0.46 +0.4 4,081,683 - RR42_RS18820 0.60 -0.1 4,081,794 - RR42_RS18820 0.68 +0.1
Or see this region's nucleotide sequence