Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15885

Experiment: R2A with Cephalothin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cephalothin 0.25 mg/ml
3,431,530	-				+0.5
3,431,530	-				-0.6
3,431,530	-				-1.4
3,431,563	+				-0.7
3,431,564	-				-0.3
3,431,564	-				+0.5
3,431,720	-		RR42_RS15880	0.22	-0.3
3,431,720	-		RR42_RS15880	0.22	-2.1
3,431,872	+		RR42_RS15880	0.43	-0.2
3,431,872	+		RR42_RS15880	0.43	+0.4
3,431,872	+		RR42_RS15880	0.43	-0.5
3,431,873	-		RR42_RS15880	0.44	+2.1
3,431,873	-		RR42_RS15880	0.44	-0.2
3,432,019	+		RR42_RS15880	0.64	-2.6
3,432,020	-		RR42_RS15880	0.64	+0.8
3,432,020	-		RR42_RS15880	0.64	+0.6
3,432,085	+		RR42_RS15880	0.73	+0.3
3,432,085	+		RR42_RS15880	0.73	-0.4
3,432,085	+		RR42_RS15880	0.73	+0.1
3,432,086	-		RR42_RS15880	0.73	-1.3
3,432,290	+				-0.5
3,432,291	-				-0.9
3,432,300	-				-0.8
3,432,332	-				-0.2
3,432,411	+				-0.7
3,432,411	+				-0.7
3,432,412	-				+0.9
3,432,412	-				+0.2
3,432,412	-				+0.1
3,432,412	-				-1.7
3,432,412	-				-0.2
3,432,416	+				-0.7
3,432,417	-				+0.2
3,432,422	-				-1.3
3,432,574	+				-0.8
3,432,574	+				-0.0
3,432,575	-				+0.8
3,432,600	-				-0.5
3,432,600	-				+0.2
3,432,600	-				-0.1
3,432,823	+		RR42_RS15885	0.23	+0.5
3,432,973	+		RR42_RS15885	0.33	-0.2
3,432,974	-		RR42_RS15885	0.33	-1.0
3,432,974	-		RR42_RS15885	0.33	+0.6
3,432,974	-		RR42_RS15885	0.33	+0.1
3,433,037	-		RR42_RS15885	0.37	+0.4
3,433,069	+		RR42_RS15885	0.39	-2.2
3,433,069	+		RR42_RS15885	0.39	-0.3
3,433,069	+		RR42_RS15885	0.39	-0.4
3,433,070	-		RR42_RS15885	0.39	+0.1
3,433,070	-		RR42_RS15885	0.39	-0.2
3,433,070	-		RR42_RS15885	0.39	-1.8
3,433,070	-		RR42_RS15885	0.39	+0.1
3,433,240	+		RR42_RS15885	0.50	-0.7
3,433,378	+		RR42_RS15885	0.59	+0.0
3,433,379	-		RR42_RS15885	0.59	-0.0
3,433,438	+		RR42_RS15885	0.63	+0.4
3,433,438	+		RR42_RS15885	0.63	-0.1
3,433,439	-		RR42_RS15885	0.63	-0.6
3,433,480	+		RR42_RS15885	0.66	+0.8
3,433,481	-		RR42_RS15885	0.66	-1.0
3,433,521	-		RR42_RS15885	0.68	-1.2
3,433,639	+		RR42_RS15885	0.76	-0.6
3,433,640	-		RR42_RS15885	0.76	-0.2
3,433,640	-		RR42_RS15885	0.76	-0.7
3,433,730	-		RR42_RS15885	0.82	+0.0
3,433,730	-		RR42_RS15885	0.82	-1.2
3,433,788	+		RR42_RS15885	0.86	-0.6
3,433,789	-		RR42_RS15885	0.86	+0.4
3,433,789	-		RR42_RS15885	0.86	+0.6
3,433,831	+		RR42_RS15885	0.88	+1.1
3,433,831	+		RR42_RS15885	0.88	-1.0
3,433,831	+		RR42_RS15885	0.88	-0.2
3,433,831	+		RR42_RS15885	0.88	+1.1
3,433,832	-		RR42_RS15885	0.88	-0.5
3,433,832	-		RR42_RS15885	0.88	+0.1
3,433,832	-		RR42_RS15885	0.88	+1.1
3,433,832	-		RR42_RS15885	0.88	-2.5
3,433,832	-		RR42_RS15885	0.88	+0.0
3,433,832	-		RR42_RS15885	0.88	-2.9
3,433,835	+		RR42_RS15885	0.89	-0.1
3,433,835	+		RR42_RS15885	0.89	-1.4
3,433,835	+		RR42_RS15885	0.89	+0.6
3,433,835	+		RR42_RS15885	0.89	-2.8
3,433,835	+		RR42_RS15885	0.89	+0.2
3,433,835	+		RR42_RS15885	0.89	-0.2
3,433,835	+		RR42_RS15885	0.89	-0.4
3,433,835	+		RR42_RS15885	0.89	-0.1
3,433,836	-		RR42_RS15885	0.89	-0.2
3,433,836	-		RR42_RS15885	0.89	+0.4
3,433,836	-		RR42_RS15885	0.89	+0.7
3,433,836	-		RR42_RS15885	0.89	-0.0
3,433,836	-		RR42_RS15885	0.89	-0.1
3,433,836	-		RR42_RS15885	0.89	-0.3
3,433,836	-		RR42_RS15885	0.89	-0.3
3,433,836	-		RR42_RS15885	0.89	-0.4
3,433,836	-		RR42_RS15885	0.89	+0.8
3,433,836	-		RR42_RS15885	0.89	+0.9
3,433,836	-		RR42_RS15885	0.89	-1.2
3,433,836	-		RR42_RS15885	0.89	-0.3
3,433,836	-		RR42_RS15885	0.89	-0.6
3,433,836	-		RR42_RS15885	0.89	-0.4
3,433,889	+				-0.8
3,433,890	-				-0.5
3,433,928	+				+0.1
3,433,928	+				+0.2
3,433,928	+				-0.0
3,433,961	+				+0.1
3,434,102	-				+0.2
3,434,102	-				+1.1
3,434,506	+		RR42_RS15890	0.11	+1.4
3,434,507	-		RR42_RS15890	0.11	+0.8
3,434,547	+		RR42_RS15890	0.14	+0.4
3,434,547	+		RR42_RS15890	0.14	+0.7
3,434,548	-		RR42_RS15890	0.14	+0.2
3,434,548	-		RR42_RS15890	0.14	+1.4
3,434,548	-		RR42_RS15890	0.14	+0.7
3,434,584	+		RR42_RS15890	0.17	+0.6
3,434,585	-		RR42_RS15890	0.18	+0.6
3,434,585	-		RR42_RS15890	0.18	-0.6
3,434,675	-		RR42_RS15890	0.25	+0.1
3,434,764	+		RR42_RS15890	0.33	-0.5
3,434,764	+		RR42_RS15890	0.33	+0.1
3,434,883	+		RR42_RS15890	0.43	-0.0
3,434,883	+		RR42_RS15890	0.43	-1.1