Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13225

Experiment: R2A with Cephalothin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cephalothin 0.25 mg/ml
2,848,437	+		RR42_RS13220	0.50	+0.1
2,848,437	+		RR42_RS13220	0.50	+0.4
2,848,437	+		RR42_RS13220	0.50	-0.5
2,848,438	-		RR42_RS13220	0.50	+0.2
2,848,586	-		RR42_RS13220	0.61	-1.4
2,848,700	-		RR42_RS13220	0.69	-0.3
2,848,700	-		RR42_RS13220	0.69	+0.1
2,848,703	+		RR42_RS13220	0.70	-0.4
2,848,703	+		RR42_RS13220	0.70	-0.1
2,848,703	+		RR42_RS13220	0.70	-1.9
2,848,704	-		RR42_RS13220	0.70	-1.6
2,848,704	-		RR42_RS13220	0.70	-0.8
2,848,704	-		RR42_RS13220	0.70	-0.5
2,848,969	+		RR42_RS13220	0.89	-0.1
2,848,970	-		RR42_RS13220	0.89	+0.3
2,848,970	-				+0.2
2,848,983	+				-0.2
2,849,297	+				+0.1
2,849,378	+		RR42_RS13225	0.11	-1.3
2,849,378	+		RR42_RS13225	0.11	-1.3
2,849,378	+		RR42_RS13225	0.11	-0.1
2,849,379	-		RR42_RS13225	0.11	-1.1
2,849,379	-		RR42_RS13225	0.11	-0.2
2,849,379	-		RR42_RS13225	0.11	-0.3
2,849,557	-		RR42_RS13225	0.36	-1.6
2,850,290	+				+0.2
2,850,291	-				-0.9
2,850,291	-				+0.5
2,850,295	-				-0.4
2,850,407	+				-0.5
2,850,407	+				+0.7
2,850,407	+				+1.3
2,850,408	-				+0.0
2,850,408	-				+0.1
2,850,460	+				-0.8
2,850,461	-				-0.7
2,850,477	+				-0.7
2,850,566	+		RR42_RS13235	0.20	-0.1
2,850,567	-		RR42_RS13235	0.20	-0.4
2,850,593	+		RR42_RS13235	0.24	-0.5
2,850,636	+		RR42_RS13235	0.29	-0.1
2,850,636	+		RR42_RS13235	0.29	-0.2
2,850,636	+		RR42_RS13235	0.29	+0.0
2,850,636	+		RR42_RS13235	0.29	+0.1
2,850,636	+		RR42_RS13235	0.29	-0.7
2,850,636	+		RR42_RS13235	0.29	+0.8
2,850,636	+		RR42_RS13235	0.29	-0.2
2,850,636	+		RR42_RS13235	0.29	-2.3
2,850,637	-		RR42_RS13235	0.29	-0.2
2,850,637	-		RR42_RS13235	0.29	+0.0
2,850,637	-		RR42_RS13235	0.29	+0.2
2,850,637	-		RR42_RS13235	0.29	+0.4
2,850,652	+		RR42_RS13235	0.31	-2.2
2,850,677	+		RR42_RS13235	0.34	+0.1
2,850,677	+		RR42_RS13235	0.34	+0.5
2,850,764	+		RR42_RS13235	0.45	-0.4
2,850,765	-		RR42_RS13235	0.45	-0.2
2,850,894	+		RR42_RS13235	0.62	-0.1
2,850,894	+		RR42_RS13235	0.62	-0.3
2,850,894	+		RR42_RS13235	0.62	-0.6
2,850,895	-		RR42_RS13235	0.62	-1.1
2,850,896	+		RR42_RS13235	0.62	-0.1
2,850,896	+		RR42_RS13235	0.62	-1.0
2,850,897	-		RR42_RS13235	0.62	-0.8
2,850,897	-		RR42_RS13235	0.62	-0.4
2,850,897	-		RR42_RS13235	0.62	-1.4
2,851,019	+		RR42_RS13235	0.77	-1.1
2,851,019	+		RR42_RS13235	0.77	-0.1
2,851,019	+		RR42_RS13235	0.77	-1.1
2,851,019	+		RR42_RS13235	0.77	-0.1
2,851,019	+		RR42_RS13235	0.77	-0.6
2,851,019	+		RR42_RS13235	0.77	+1.5
2,851,020	-		RR42_RS13235	0.78	-0.2
2,851,020	-		RR42_RS13235	0.78	-0.1
2,851,020	-		RR42_RS13235	0.78	+0.1
2,851,020	-		RR42_RS13235	0.78	+0.1
2,851,020	-		RR42_RS13235	0.78	-1.2
2,851,020	-		RR42_RS13235	0.78	+1.4