Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12775

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12765 and RR42_RS12770 are separated by 433 nucleotidesRR42_RS12770 and RR42_RS12775 are separated by 58 nucleotidesRR42_RS12775 and RR42_RS12780 are separated by 100 nucleotidesRR42_RS12780 and RR42_RS12785 are separated by 179 nucleotidesRR42_RS12785 and RR42_RS12790 are separated by 130 nucleotides RR42_RS12765: RR42_RS12765 - protein kinase, at 2,741,615 to 2,743,696 _RS12765 RR42_RS12770: RR42_RS12770 - hypothetical protein, at 2,744,130 to 2,744,387 _RS12770 RR42_RS12775: RR42_RS12775 - hypothetical protein, at 2,744,446 to 2,744,703 _RS12775 RR42_RS12780: RR42_RS12780 - hypothetical protein, at 2,744,804 to 2,745,067 _RS12780 RR42_RS12785: RR42_RS12785 - hypothetical protein, at 2,745,247 to 2,745,465 _RS12785 RR42_RS12790: RR42_RS12790 - ACP phosphodiesterase, at 2,745,596 to 2,746,156 _RS12790 Position (kb) 2744 2745Strain fitness (log2 ratio) -1 0 1 2at 2743.527 kb on + strandat 2743.528 kb on - strandat 2743.669 kb on + strandat 2743.669 kb on + strandat 2743.673 kb on + strandat 2743.673 kb on + strandat 2743.673 kb on + strandat 2743.673 kb on + strandat 2743.674 kb on - strandat 2743.674 kb on - strandat 2743.764 kb on - strandat 2743.781 kb on - strandat 2743.781 kb on - strandat 2743.783 kb on + strandat 2743.874 kb on + strandat 2743.874 kb on + strandat 2743.875 kb on - strandat 2744.698 kb on + strandat 2745.157 kb on + strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.392 kb on - strand, within RR42_RS12785at 2745.463 kb on + strandat 2745.464 kb on - strandat 2745.493 kb on - strandat 2745.493 kb on - strandat 2745.631 kb on - strandat 2745.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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2,743,527 + -0.6
2,743,528 - -0.9
2,743,669 + -0.0
2,743,669 + -0.5
2,743,673 + -0.1
2,743,673 + +1.3
2,743,673 + -1.3
2,743,673 + -0.8
2,743,674 - -0.4
2,743,674 - -0.4
2,743,764 - +0.1
2,743,781 - -1.0
2,743,781 - +0.5
2,743,783 + +0.1
2,743,874 + -0.2
2,743,874 + +1.5
2,743,875 - +0.2
2,744,698 + -0.9
2,745,157 + +1.6
2,745,158 - +0.9
2,745,158 - +0.2
2,745,158 - -0.5
2,745,158 - +2.5
2,745,158 - +0.7
2,745,392 - RR42_RS12785 0.66 +1.6
2,745,463 + -0.2
2,745,464 - -0.1
2,745,493 - -0.1
2,745,493 - -0.3
2,745,631 - +0.6
2,745,642 + +0.5

Or see this region's nucleotide sequence