Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12390

Experiment: R2A with Cephalothin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cephalothin 0.25 mg/ml
2,656,967	+		RR42_RS12385	0.37	-2.6
2,656,968	-		RR42_RS12385	0.37	+0.7
2,656,968	-		RR42_RS12385	0.37	+0.2
2,657,029	+		RR42_RS12385	0.42	-2.3
2,657,029	+		RR42_RS12385	0.42	+0.3
2,657,029	+		RR42_RS12385	0.42	+0.6
2,657,029	+		RR42_RS12385	0.42	-1.2
2,657,030	-		RR42_RS12385	0.42	-0.1
2,657,030	-		RR42_RS12385	0.42	+1.2
2,657,042	-		RR42_RS12385	0.43	-1.0
2,657,042	-		RR42_RS12385	0.43	+0.4
2,657,042	-		RR42_RS12385	0.43	-0.5
2,657,109	-		RR42_RS12385	0.48	-0.8
2,657,109	-		RR42_RS12385	0.48	+0.6
2,657,252	+		RR42_RS12385	0.60	+0.3
2,657,253	-		RR42_RS12385	0.60	-2.0
2,657,253	-		RR42_RS12385	0.60	+0.4
2,657,344	+		RR42_RS12385	0.67	-0.7
2,657,345	-		RR42_RS12385	0.67	-0.7
2,657,466	+		RR42_RS12385	0.77	+0.1
2,657,614	+		RR42_RS12385	0.89	-0.8
2,657,615	-		RR42_RS12385	0.89	+1.7
2,657,615	-		RR42_RS12385	0.89	+0.0
2,657,913	+				+0.6
2,657,914	-				-0.3
2,657,914	-				+0.5
2,658,033	+		RR42_RS12390	0.24	-2.4
2,658,083	-		RR42_RS12390	0.33	-0.4
2,658,214	-		RR42_RS12390	0.59	-0.7
2,658,398	+				-0.2
2,658,402	+				-1.1
2,658,402	+				+0.0
2,658,419	+				+0.1
2,658,429	+				-1.0
2,658,429	+				+0.4
2,658,430	-				+0.8
2,658,511	+				+0.2
2,658,511	+				+0.4
2,658,511	+				-0.6
2,658,512	-				-0.3
2,658,512	-				-0.5
2,658,512	-				+1.3
2,658,513	+				-1.4
2,658,513	+				-0.1
2,658,514	-				-0.5
2,658,514	-				-0.1
2,658,774	-		RR42_RS12395	0.10	+0.8
2,658,774	-		RR42_RS12395	0.10	-1.0
2,659,161	+		RR42_RS12395	0.44	+0.1
2,659,161	+		RR42_RS12395	0.44	+0.5
2,659,162	-		RR42_RS12395	0.44	+0.5
2,659,162	-		RR42_RS12395	0.44	+0.7
2,659,177	-		RR42_RS12395	0.46	+0.5
2,659,264	+		RR42_RS12395	0.53	-1.7
2,659,264	+		RR42_RS12395	0.53	+0.4
2,659,264	+		RR42_RS12395	0.53	-0.4
2,659,351	+		RR42_RS12395	0.61	-0.0