Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04005 and RR42_RS04010 are separated by 36 nucleotides RR42_RS04010 and RR42_RS04015 overlap by 14 nucleotides RR42_RS04015 and RR42_RS04020 are separated by 239 nucleotides
RR42_RS04005: RR42_RS04005 - carbon monoxide dehydrogenase, at 887,824 to 890,067
_RS04005
RR42_RS04010: RR42_RS04010 - transcriptional regulator, at 890,104 to 890,985
_RS04010
RR42_RS04015: RR42_RS04015 - RNA polymerase sigma factor, at 890,972 to 891,670
_RS04015
RR42_RS04020: RR42_RS04020 - serine/threonine protein phosphatase, at 891,910 to 892,791
_RS04020
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1 at 890.189 kb on + strand at 890.190 kb on - strand at 890.226 kb on - strand, within RR42_RS04010 at 890.388 kb on - strand, within RR42_RS04010 at 890.388 kb on - strand, within RR42_RS04010 at 890.388 kb on - strand, within RR42_RS04010 at 890.594 kb on + strand, within RR42_RS04010 at 890.595 kb on - strand, within RR42_RS04010 at 890.673 kb on - strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 891.409 kb on - strand, within RR42_RS04015 at 891.606 kb on + strand at 891.607 kb on - strand at 891.743 kb on - strand at 891.791 kb on - strand at 891.816 kb on + strand at 891.909 kb on + strand at 891.909 kb on + strand at 892.021 kb on + strand, within RR42_RS04020 at 892.022 kb on - strand, within RR42_RS04020 at 892.022 kb on - strand, within RR42_RS04020 at 892.022 kb on - strand, within RR42_RS04020 at 892.324 kb on + strand, within RR42_RS04020 at 892.324 kb on + strand, within RR42_RS04020 at 892.325 kb on - strand, within RR42_RS04020 at 892.489 kb on + strand, within RR42_RS04020 at 892.571 kb on - strand, within RR42_RS04020 at 892.579 kb on - strand, within RR42_RS04020 at 892.611 kb on + strand, within RR42_RS04020 at 892.640 kb on + strand, within RR42_RS04020 at 892.642 kb on + strand, within RR42_RS04020 at 892.642 kb on + strand, within RR42_RS04020 at 892.643 kb on - strand, within RR42_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 890,189 + -1.2 890,190 - +0.2 890,226 - RR42_RS04010 0.14 +0.9 890,388 - RR42_RS04010 0.32 +0.2 890,388 - RR42_RS04010 0.32 +0.6 890,388 - RR42_RS04010 0.32 -0.0 890,594 + RR42_RS04010 0.56 +0.4 890,595 - RR42_RS04010 0.56 -1.3 890,673 - RR42_RS04010 0.65 -0.7 890,886 + RR42_RS04010 0.89 -0.5 890,886 + RR42_RS04010 0.89 -0.9 890,886 + RR42_RS04010 0.89 -0.2 890,886 + RR42_RS04010 0.89 -0.4 890,887 - RR42_RS04010 0.89 +0.0 890,887 - RR42_RS04010 0.89 +1.1 890,887 - RR42_RS04010 0.89 -1.2 890,887 - RR42_RS04010 0.89 +0.2 890,887 - RR42_RS04010 0.89 -0.2 890,887 - RR42_RS04010 0.89 +0.1 891,409 - RR42_RS04015 0.63 -0.9 891,606 + -0.5 891,607 - -1.0 891,743 - +0.3 891,791 - +1.1 891,816 + +0.4 891,909 + -0.5 891,909 + +0.6 892,021 + RR42_RS04020 0.13 -0.1 892,022 - RR42_RS04020 0.13 -0.6 892,022 - RR42_RS04020 0.13 -0.5 892,022 - RR42_RS04020 0.13 -1.3 892,324 + RR42_RS04020 0.47 +0.1 892,324 + RR42_RS04020 0.47 +0.4 892,325 - RR42_RS04020 0.47 +0.7 892,489 + RR42_RS04020 0.66 +0.3 892,571 - RR42_RS04020 0.75 -1.7 892,579 - RR42_RS04020 0.76 +0.5 892,611 + RR42_RS04020 0.79 +0.2 892,640 + RR42_RS04020 0.83 -0.3 892,642 + RR42_RS04020 0.83 -0.3 892,642 + RR42_RS04020 0.83 +0.5 892,643 - RR42_RS04020 0.83 +0.6
Or see this region's nucleotide sequence