Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03930 and RR42_RS03935 are separated by 141 nucleotides RR42_RS03935 and RR42_RS03940 are separated by 66 nucleotides
RR42_RS03930: RR42_RS03930 - (2Fe-2S)-binding protein, at 866,349 to 867,365
_RS03930
RR42_RS03935: RR42_RS03935 - purine permease, at 867,507 to 868,805
_RS03935
RR42_RS03940: RR42_RS03940 - membrane protein, at 868,872 to 870,041
_RS03940
Position (kb) 867
868
869 Strain fitness (log2 ratio) -1
0
1
2 at 866.539 kb on - strand, within RR42_RS03930 at 866.587 kb on - strand, within RR42_RS03930 at 866.778 kb on + strand, within RR42_RS03930 at 866.778 kb on + strand, within RR42_RS03930 at 867.237 kb on + strand, within RR42_RS03930 at 867.363 kb on + strand at 867.363 kb on + strand at 867.364 kb on - strand at 867.590 kb on - strand at 867.590 kb on - strand at 867.590 kb on - strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.595 kb on - strand at 867.595 kb on - strand at 868.203 kb on + strand, within RR42_RS03935 at 868.203 kb on + strand, within RR42_RS03935 at 868.405 kb on - strand, within RR42_RS03935 at 868.405 kb on - strand, within RR42_RS03935 at 868.413 kb on + strand, within RR42_RS03935 at 868.647 kb on + strand, within RR42_RS03935 at 868.647 kb on + strand, within RR42_RS03935 at 868.648 kb on - strand, within RR42_RS03935 at 868.648 kb on - strand, within RR42_RS03935 at 868.650 kb on - strand, within RR42_RS03935 at 868.777 kb on + strand at 868.899 kb on + strand at 868.900 kb on - strand at 869.314 kb on + strand, within RR42_RS03940 at 869.315 kb on - strand, within RR42_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 866,539 - RR42_RS03930 0.19 +0.3 866,587 - RR42_RS03930 0.23 -0.4 866,778 + RR42_RS03930 0.42 -0.2 866,778 + RR42_RS03930 0.42 -0.7 867,237 + RR42_RS03930 0.87 +0.1 867,363 + -0.5 867,363 + +0.4 867,364 - -1.2 867,590 - -0.7 867,590 - +1.1 867,590 - -0.5 867,594 + +0.1 867,594 + +0.7 867,594 + +0.1 867,594 + -1.1 867,594 + +0.2 867,595 - -0.0 867,595 - -0.2 868,203 + RR42_RS03935 0.54 +1.8 868,203 + RR42_RS03935 0.54 +0.8 868,405 - RR42_RS03935 0.69 +1.9 868,405 - RR42_RS03935 0.69 +0.1 868,413 + RR42_RS03935 0.70 -0.0 868,647 + RR42_RS03935 0.88 -0.1 868,647 + RR42_RS03935 0.88 -1.6 868,648 - RR42_RS03935 0.88 +0.3 868,648 - RR42_RS03935 0.88 -0.2 868,650 - RR42_RS03935 0.88 +0.2 868,777 + -1.4 868,899 + -0.2 868,900 - -0.3 869,314 + RR42_RS03940 0.38 +0.7 869,315 - RR42_RS03940 0.38 +0.6
Or see this region's nucleotide sequence