Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03050

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03045 and RR42_RS03050 are separated by 106 nucleotidesRR42_RS03050 and RR42_RS03055 are separated by 300 nucleotidesRR42_RS03055 and RR42_RS03060 are separated by 204 nucleotides RR42_RS03045: RR42_RS03045 - dioxygenase, at 674,200 to 675,021 _RS03045 RR42_RS03050: RR42_RS03050 - energy transducer TonB, at 675,128 to 675,868 _RS03050 RR42_RS03055: RR42_RS03055 - tRNA-Met, at 676,169 to 676,245 _RS03055 RR42_RS03060: RR42_RS03060 - MFS transporter, at 676,450 to 678,150 _RS03060 Position (kb) 675 676Strain fitness (log2 ratio) -2 -1 0 1 2at 674.216 kb on - strandat 674.407 kb on + strand, within RR42_RS03045at 674.408 kb on - strand, within RR42_RS03045at 674.408 kb on - strand, within RR42_RS03045at 674.408 kb on - strand, within RR42_RS03045at 674.473 kb on + strand, within RR42_RS03045at 674.474 kb on - strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.533 kb on - strand, within RR42_RS03045at 674.552 kb on - strand, within RR42_RS03045at 674.552 kb on - strand, within RR42_RS03045at 674.819 kb on - strand, within RR42_RS03045at 674.969 kb on + strandat 675.762 kb on + strand, within RR42_RS03050at 675.762 kb on + strand, within RR42_RS03050at 675.766 kb on - strand, within RR42_RS03050at 675.766 kb on - strand, within RR42_RS03050at 675.766 kb on - strand, within RR42_RS03050at 675.846 kb on + strandat 675.847 kb on - strandat 675.847 kb on - strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.901 kb on - strandat 675.901 kb on - strandat 675.901 kb on - strandat 675.901 kb on - strandat 676.004 kb on + strandat 676.004 kb on + strandat 676.004 kb on + strandat 676.004 kb on + strandat 676.005 kb on - strandat 676.167 kb on + strandat 676.168 kb on - strandat 676.463 kb on + strandat 676.463 kb on + strandat 676.463 kb on + strandat 676.464 kb on - strandat 676.464 kb on - strandat 676.550 kb on + strandat 676.551 kb on - strandat 676.553 kb on + strandat 676.553 kb on + strandat 676.631 kb on + strand, within RR42_RS03060at 676.632 kb on - strand, within RR42_RS03060at 676.632 kb on - strand, within RR42_RS03060at 676.653 kb on - strand, within RR42_RS03060at 676.653 kb on - strand, within RR42_RS03060at 676.703 kb on + strand, within RR42_RS03060at 676.704 kb on - strand, within RR42_RS03060at 676.718 kb on + strand, within RR42_RS03060at 676.719 kb on - strand, within RR42_RS03060

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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674,216 - -1.5
674,407 + RR42_RS03045 0.25 +0.9
674,408 - RR42_RS03045 0.25 +1.7
674,408 - RR42_RS03045 0.25 +1.3
674,408 - RR42_RS03045 0.25 -0.7
674,473 + RR42_RS03045 0.33 -0.4
674,474 - RR42_RS03045 0.33 +0.2
674,530 + RR42_RS03045 0.40 -0.0
674,530 + RR42_RS03045 0.40 +0.2
674,530 + RR42_RS03045 0.40 -0.9
674,530 + RR42_RS03045 0.40 -1.0
674,530 + RR42_RS03045 0.40 -0.1
674,531 - RR42_RS03045 0.40 -0.8
674,531 - RR42_RS03045 0.40 +0.1
674,531 - RR42_RS03045 0.40 -0.5
674,531 - RR42_RS03045 0.40 +0.4
674,531 - RR42_RS03045 0.40 -0.4
674,531 - RR42_RS03045 0.40 -0.8
674,531 - RR42_RS03045 0.40 +0.2
674,531 - RR42_RS03045 0.40 -0.2
674,532 + RR42_RS03045 0.40 -0.3
674,532 + RR42_RS03045 0.40 +0.0
674,532 + RR42_RS03045 0.40 +0.3
674,532 + RR42_RS03045 0.40 -0.6
674,532 + RR42_RS03045 0.40 +0.5
674,533 - RR42_RS03045 0.41 -0.3
674,552 - RR42_RS03045 0.43 -0.9
674,552 - RR42_RS03045 0.43 -0.2
674,819 - RR42_RS03045 0.75 -1.3
674,969 + +1.0
675,762 + RR42_RS03050 0.86 -0.1
675,762 + RR42_RS03050 0.86 -1.2
675,766 - RR42_RS03050 0.86 -2.4
675,766 - RR42_RS03050 0.86 +1.2
675,766 - RR42_RS03050 0.86 -0.9
675,846 + -0.2
675,847 - -1.8
675,847 - -0.4
675,900 + -0.3
675,900 + -1.8
675,900 + +0.1
675,900 + +1.8
675,900 + -1.0
675,901 - -0.6
675,901 - +1.9
675,901 - +0.9
675,901 - +0.7
676,004 + -0.3
676,004 + +0.0
676,004 + -0.4
676,004 + +0.8
676,005 - -0.7
676,167 + -0.8
676,168 - -2.6
676,463 + +0.6
676,463 + -0.4
676,463 + -0.6
676,464 - +0.1
676,464 - +0.1
676,550 + -0.7
676,551 - +0.3
676,553 + +0.9
676,553 + -0.4
676,631 + RR42_RS03060 0.11 +0.4
676,632 - RR42_RS03060 0.11 +0.7
676,632 - RR42_RS03060 0.11 +1.1
676,653 - RR42_RS03060 0.12 +1.4
676,653 - RR42_RS03060 0.12 -0.4
676,703 + RR42_RS03060 0.15 -0.1
676,704 - RR42_RS03060 0.15 -0.1
676,718 + RR42_RS03060 0.16 -0.0
676,719 - RR42_RS03060 0.16 +0.6

Or see this region's nucleotide sequence