Experiment: R2A with Cephalothin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02900 and RR42_RS02905 are separated by 220 nucleotides RR42_RS02905 and RR42_RS02910 are separated by 34 nucleotides
RR42_RS02900: RR42_RS02900 - LysR family transcriptional regulator, at 646,769 to 647,710
_RS02900
RR42_RS02905: RR42_RS02905 - MFS transporter, at 647,931 to 648,929
_RS02905
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1 at 646.965 kb on + strand, within RR42_RS02900 at 647.025 kb on - strand, within RR42_RS02900 at 647.046 kb on + strand, within RR42_RS02900 at 647.047 kb on - strand, within RR42_RS02900 at 647.250 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.284 kb on - strand, within RR42_RS02900 at 647.489 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.497 kb on - strand, within RR42_RS02900 at 647.502 kb on + strand, within RR42_RS02900 at 647.503 kb on - strand, within RR42_RS02900 at 647.791 kb on + strand at 647.791 kb on + strand at 647.791 kb on + strand at 647.791 kb on + strand at 648.024 kb on - strand at 648.201 kb on + strand, within RR42_RS02905 at 648.201 kb on + strand, within RR42_RS02905 at 648.252 kb on + strand, within RR42_RS02905 at 648.388 kb on - strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.505 kb on - strand, within RR42_RS02905 at 648.566 kb on + strand, within RR42_RS02905 at 648.624 kb on - strand, within RR42_RS02905 at 649.045 kb on + strand at 649.046 kb on - strand at 649.171 kb on + strand, within RR42_RS02910 at 649.690 kb on + strand, within RR42_RS02910 at 649.888 kb on + strand, within RR42_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml remove 646,965 + RR42_RS02900 0.21 -1.1 647,025 - RR42_RS02900 0.27 -0.3 647,046 + RR42_RS02900 0.29 -0.4 647,047 - RR42_RS02900 0.30 -0.2 647,250 + RR42_RS02900 0.51 -0.3 647,283 + RR42_RS02900 0.55 -0.5 647,283 + RR42_RS02900 0.55 +1.1 647,284 - RR42_RS02900 0.55 -0.8 647,489 + RR42_RS02900 0.76 +0.3 647,496 + RR42_RS02900 0.77 +0.1 647,496 + RR42_RS02900 0.77 +0.6 647,497 - RR42_RS02900 0.77 -1.3 647,502 + RR42_RS02900 0.78 +0.1 647,503 - RR42_RS02900 0.78 +0.1 647,791 + +0.0 647,791 + -0.0 647,791 + -0.0 647,791 + -0.4 648,024 - -0.6 648,201 + RR42_RS02905 0.27 +1.0 648,201 + RR42_RS02905 0.27 -0.1 648,252 + RR42_RS02905 0.32 +0.5 648,388 - RR42_RS02905 0.46 -0.3 648,504 + RR42_RS02905 0.57 -0.7 648,504 + RR42_RS02905 0.57 +0.7 648,504 + RR42_RS02905 0.57 -0.3 648,505 - RR42_RS02905 0.57 -0.1 648,566 + RR42_RS02905 0.64 -0.4 648,624 - RR42_RS02905 0.69 +0.7 649,045 + -1.3 649,046 - -1.3 649,171 + RR42_RS02910 0.17 -1.9 649,690 + RR42_RS02910 0.58 -2.1 649,888 + RR42_RS02910 0.74 -1.3
Or see this region's nucleotide sequence