Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00515

Experiment: R2A with Cephalothin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00505 and RR42_RS00510 overlap by 34 nucleotidesRR42_RS00510 and RR42_RS00515 are separated by 229 nucleotidesRR42_RS00515 and RR42_RS00520 are separated by 142 nucleotides RR42_RS00505: RR42_RS00505 - histidine kinase, at 131,990 to 134,026 _RS00505 RR42_RS00510: RR42_RS00510 - transcriptional regulator, at 133,993 to 134,652 _RS00510 RR42_RS00515: RR42_RS00515 - phosphonate monoester hydrolase, at 134,882 to 136,441 _RS00515 RR42_RS00520: RR42_RS00520 - ABC transporter substrate-binding protein, at 136,584 to 137,531 _RS00520 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 133.927 kb on + strandat 133.928 kb on - strandat 134.022 kb on + strandat 134.022 kb on + strandat 134.022 kb on + strandat 134.022 kb on + strandat 134.022 kb on + strandat 134.022 kb on + strandat 134.022 kb on + strandat 134.023 kb on - strandat 134.023 kb on - strandat 134.024 kb on + strandat 134.025 kb on - strandat 134.025 kb on - strandat 134.025 kb on - strandat 134.127 kb on - strand, within RR42_RS00510at 134.363 kb on + strand, within RR42_RS00510at 134.363 kb on + strand, within RR42_RS00510at 134.392 kb on + strand, within RR42_RS00510at 134.393 kb on - strand, within RR42_RS00510at 134.602 kb on + strandat 134.602 kb on + strandat 134.759 kb on + strandat 134.771 kb on + strandat 134.772 kb on - strandat 134.796 kb on - strandat 134.799 kb on - strandat 134.916 kb on + strandat 134.917 kb on - strandat 134.917 kb on - strandat 135.111 kb on + strand, within RR42_RS00515at 135.111 kb on + strand, within RR42_RS00515at 135.111 kb on + strand, within RR42_RS00515at 135.112 kb on - strand, within RR42_RS00515at 135.112 kb on - strand, within RR42_RS00515at 135.195 kb on + strand, within RR42_RS00515at 135.196 kb on - strand, within RR42_RS00515at 135.396 kb on + strand, within RR42_RS00515at 135.397 kb on - strand, within RR42_RS00515at 135.429 kb on + strand, within RR42_RS00515at 135.429 kb on + strand, within RR42_RS00515at 135.430 kb on - strand, within RR42_RS00515at 135.583 kb on - strand, within RR42_RS00515at 135.723 kb on + strand, within RR42_RS00515at 135.735 kb on + strand, within RR42_RS00515at 135.751 kb on + strand, within RR42_RS00515at 135.752 kb on - strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.754 kb on - strand, within RR42_RS00515at 135.819 kb on + strand, within RR42_RS00515at 135.819 kb on + strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.836 kb on + strand, within RR42_RS00515at 135.841 kb on + strand, within RR42_RS00515at 135.841 kb on + strand, within RR42_RS00515at 135.841 kb on + strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.844 kb on - strand, within RR42_RS00515at 135.949 kb on - strand, within RR42_RS00515at 135.975 kb on + strand, within RR42_RS00515at 136.182 kb on + strand, within RR42_RS00515at 136.263 kb on + strand, within RR42_RS00515at 136.263 kb on + strand, within RR42_RS00515at 136.263 kb on + strand, within RR42_RS00515at 136.264 kb on - strand, within RR42_RS00515at 136.264 kb on - strand, within RR42_RS00515at 136.264 kb on - strand, within RR42_RS00515at 136.378 kb on - strandat 136.378 kb on - strandat 136.828 kb on + strand, within RR42_RS00520at 137.076 kb on + strand, within RR42_RS00520at 137.092 kb on + strand, within RR42_RS00520at 137.134 kb on + strand, within RR42_RS00520at 137.134 kb on + strand, within RR42_RS00520at 137.135 kb on - strand, within RR42_RS00520at 137.135 kb on - strand, within RR42_RS00520at 137.135 kb on - strand, within RR42_RS00520at 137.233 kb on + strand, within RR42_RS00520at 137.233 kb on + strand, within RR42_RS00520at 137.233 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.327 kb on - strand, within RR42_RS00520at 137.327 kb on - strand, within RR42_RS00520at 137.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cephalothin 0.25 mg/ml
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133,927 + +1.4
133,928 - -0.5
134,022 + +0.1
134,022 + -0.2
134,022 + -2.2
134,022 + -0.4
134,022 + +0.2
134,022 + -0.6
134,022 + +0.7
134,023 - -0.5
134,023 - -0.4
134,024 + -0.1
134,025 - -0.3
134,025 - -1.2
134,025 - -0.6
134,127 - RR42_RS00510 0.20 -0.5
134,363 + RR42_RS00510 0.56 +0.9
134,363 + RR42_RS00510 0.56 -0.2
134,392 + RR42_RS00510 0.60 -1.1
134,393 - RR42_RS00510 0.61 +0.4
134,602 + +0.7
134,602 + +0.2
134,759 + +0.2
134,771 + +0.6
134,772 - -1.2
134,796 - -1.9
134,799 - +0.1
134,916 + +1.0
134,917 - -1.3
134,917 - +0.0
135,111 + RR42_RS00515 0.15 +0.0
135,111 + RR42_RS00515 0.15 -1.2
135,111 + RR42_RS00515 0.15 -0.0
135,112 - RR42_RS00515 0.15 -1.8
135,112 - RR42_RS00515 0.15 -0.8
135,195 + RR42_RS00515 0.20 -0.9
135,196 - RR42_RS00515 0.20 +0.4
135,396 + RR42_RS00515 0.33 -0.3
135,397 - RR42_RS00515 0.33 -0.0
135,429 + RR42_RS00515 0.35 -0.2
135,429 + RR42_RS00515 0.35 -1.1
135,430 - RR42_RS00515 0.35 +0.0
135,583 - RR42_RS00515 0.45 +0.9
135,723 + RR42_RS00515 0.54 +0.8
135,735 + RR42_RS00515 0.55 -0.9
135,751 + RR42_RS00515 0.56 -1.2
135,752 - RR42_RS00515 0.56 +0.1
135,753 + RR42_RS00515 0.56 +0.7
135,753 + RR42_RS00515 0.56 -0.8
135,753 + RR42_RS00515 0.56 +0.1
135,753 + RR42_RS00515 0.56 -2.1
135,753 + RR42_RS00515 0.56 -0.7
135,754 - RR42_RS00515 0.56 -1.1
135,819 + RR42_RS00515 0.60 +0.0
135,819 + RR42_RS00515 0.60 +1.1
135,820 - RR42_RS00515 0.60 -0.8
135,820 - RR42_RS00515 0.60 -0.4
135,820 - RR42_RS00515 0.60 -0.6
135,820 - RR42_RS00515 0.60 +0.6
135,836 + RR42_RS00515 0.61 +1.3
135,841 + RR42_RS00515 0.61 -0.3
135,841 + RR42_RS00515 0.61 +0.1
135,841 + RR42_RS00515 0.61 -0.5
135,842 - RR42_RS00515 0.62 +0.2
135,842 - RR42_RS00515 0.62 +0.1
135,842 - RR42_RS00515 0.62 -0.3
135,842 - RR42_RS00515 0.62 -0.8
135,842 - RR42_RS00515 0.62 +0.7
135,842 - RR42_RS00515 0.62 -0.8
135,842 - RR42_RS00515 0.62 -0.1
135,842 - RR42_RS00515 0.62 -0.0
135,842 - RR42_RS00515 0.62 -1.9
135,844 - RR42_RS00515 0.62 +0.6
135,949 - RR42_RS00515 0.68 +0.0
135,975 + RR42_RS00515 0.70 -0.2
136,182 + RR42_RS00515 0.83 -0.2
136,263 + RR42_RS00515 0.89 -0.4
136,263 + RR42_RS00515 0.89 -0.8
136,263 + RR42_RS00515 0.89 -0.6
136,264 - RR42_RS00515 0.89 +0.8
136,264 - RR42_RS00515 0.89 -0.1
136,264 - RR42_RS00515 0.89 +0.6
136,378 - +1.0
136,378 - -0.1
136,828 + RR42_RS00520 0.26 -0.1
137,076 + RR42_RS00520 0.52 +0.8
137,092 + RR42_RS00520 0.54 -0.2
137,134 + RR42_RS00520 0.58 +0.3
137,134 + RR42_RS00520 0.58 -0.3
137,135 - RR42_RS00520 0.58 -0.4
137,135 - RR42_RS00520 0.58 -0.6
137,135 - RR42_RS00520 0.58 -0.7
137,233 + RR42_RS00520 0.68 -1.7
137,233 + RR42_RS00520 0.68 +0.2
137,233 + RR42_RS00520 0.68 +0.7
137,248 + RR42_RS00520 0.70 -1.2
137,248 + RR42_RS00520 0.70 +0.6
137,248 + RR42_RS00520 0.70 +0.2
137,248 + RR42_RS00520 0.70 +0.1
137,327 - RR42_RS00520 0.78 +0.3
137,327 - RR42_RS00520 0.78 +0.8
137,327 - +1.4

Or see this region's nucleotide sequence