Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_912

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_910 and Pf1N1B4_911 overlap by 11 nucleotidesPf1N1B4_911 and Pf1N1B4_912 are separated by 359 nucleotidesPf1N1B4_912 and Pf1N1B4_913 overlap by 4 nucleotidesPf1N1B4_913 and Pf1N1B4_914 are separated by 65 nucleotides Pf1N1B4_910 - Cyanate transport protein CynX, at 1,036,223 to 1,037,539 _910 Pf1N1B4_911 - Transcriptional regulator, GntR family, at 1,037,529 to 1,038,155 _911 Pf1N1B4_912 - Toxin mRNA interferase YgiU, at 1,038,515 to 1,038,667 _912 Pf1N1B4_913 - FIG00958224: hypothetical protein, at 1,038,664 to 1,039,152 _913 Pf1N1B4_914 - ABC-type polar amino acid transport system, ATPase component, at 1,039,218 to 1,039,982 _914 Position (kb) 1038 1039Strain fitness (log2 ratio) -2 -1 0 1 2at 1037.607 kb on + strand, within Pf1N1B4_911at 1037.607 kb on + strand, within Pf1N1B4_911at 1037.607 kb on + strand, within Pf1N1B4_911at 1037.607 kb on + strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.608 kb on - strand, within Pf1N1B4_911at 1037.696 kb on - strandat 1037.767 kb on + strand, within Pf1N1B4_911at 1037.767 kb on + strand, within Pf1N1B4_911at 1037.767 kb on + strand, within Pf1N1B4_911at 1037.767 kb on + strand, within Pf1N1B4_911at 1037.767 kb on + strand, within Pf1N1B4_911at 1037.767 kb on + strand, within Pf1N1B4_911at 1037.767 kb on + strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strandat 1037.768 kb on - strandat 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strand, within Pf1N1B4_911at 1037.768 kb on - strandat 1037.789 kb on - strand, within Pf1N1B4_911at 1037.789 kb on - strand, within Pf1N1B4_911at 1037.968 kb on + strand, within Pf1N1B4_911at 1037.969 kb on - strand, within Pf1N1B4_911at 1038.084 kb on + strand, within Pf1N1B4_911at 1038.084 kb on + strandat 1038.085 kb on - strand, within Pf1N1B4_911at 1038.085 kb on - strand, within Pf1N1B4_911at 1038.105 kb on + strandat 1038.105 kb on + strandat 1038.106 kb on - strandat 1038.106 kb on - strandat 1038.106 kb on - strandat 1038.106 kb on - strandat 1038.106 kb on - strandat 1038.106 kb on - strandat 1038.106 kb on - strandat 1038.235 kb on + strandat 1038.236 kb on - strandat 1038.236 kb on - strandat 1038.236 kb on - strandat 1038.244 kb on - strandat 1038.244 kb on - strandat 1038.266 kb on - strandat 1038.266 kb on - strandat 1038.313 kb on + strandat 1038.332 kb on + strandat 1038.377 kb on + strandat 1038.468 kb on + strandat 1038.468 kb on + strandat 1038.469 kb on - strandat 1038.539 kb on + strand, within Pf1N1B4_912at 1038.539 kb on + strand, within Pf1N1B4_912at 1038.539 kb on + strand, within Pf1N1B4_912at 1038.539 kb on + strand, within Pf1N1B4_912at 1038.539 kb on + strand, within Pf1N1B4_912at 1038.539 kb on + strand, within Pf1N1B4_912at 1038.539 kb on + strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.540 kb on - strand, within Pf1N1B4_912at 1038.569 kb on + strand, within Pf1N1B4_912at 1038.570 kb on - strand, within Pf1N1B4_912at 1038.570 kb on - strand, within Pf1N1B4_912at 1038.570 kb on - strand, within Pf1N1B4_912at 1038.599 kb on + strand, within Pf1N1B4_912at 1038.600 kb on - strand, within Pf1N1B4_912at 1038.664 kb on - strandat 1038.664 kb on - strandat 1038.743 kb on - strand, within Pf1N1B4_913at 1038.900 kb on - strand, within Pf1N1B4_913at 1038.927 kb on + strand, within Pf1N1B4_913at 1038.927 kb on + strand, within Pf1N1B4_913at 1039.001 kb on + strand, within Pf1N1B4_913at 1039.001 kb on + strand, within Pf1N1B4_913at 1039.001 kb on + strand, within Pf1N1B4_913at 1039.001 kb on + strand, within Pf1N1B4_913at 1039.001 kb on + strand, within Pf1N1B4_913at 1039.002 kb on - strand, within Pf1N1B4_913at 1039.029 kb on - strand, within Pf1N1B4_913at 1039.029 kb on - strand, within Pf1N1B4_913at 1039.029 kb on - strand, within Pf1N1B4_913at 1039.037 kb on + strand, within Pf1N1B4_913at 1039.037 kb on + strand, within Pf1N1B4_913at 1039.037 kb on + strandat 1039.054 kb on + strand, within Pf1N1B4_913at 1039.054 kb on + strand, within Pf1N1B4_913at 1039.055 kb on - strand, within Pf1N1B4_913at 1039.055 kb on - strand, within Pf1N1B4_913at 1039.106 kb on + strandat 1039.106 kb on + strandat 1039.106 kb on + strandat 1039.106 kb on + strandat 1039.106 kb on + strandat 1039.106 kb on + strandat 1039.106 kb on + strandat 1039.107 kb on - strandat 1039.107 kb on - strandat 1039.107 kb on - strandat 1039.107 kb on - strandat 1039.107 kb on - strandat 1039.173 kb on + strandat 1039.197 kb on + strandat 1039.547 kb on - strand, within Pf1N1B4_914at 1039.547 kb on - strand, within Pf1N1B4_914at 1039.550 kb on + strand, within Pf1N1B4_914at 1039.550 kb on + strand, within Pf1N1B4_914at 1039.550 kb on + strand, within Pf1N1B4_914at 1039.550 kb on + strand, within Pf1N1B4_914at 1039.551 kb on - strand, within Pf1N1B4_914at 1039.551 kb on - strand, within Pf1N1B4_914at 1039.551 kb on - strand, within Pf1N1B4_914at 1039.573 kb on - strand, within Pf1N1B4_914at 1039.585 kb on + strandat 1039.585 kb on + strand, within Pf1N1B4_914at 1039.585 kb on + strand, within Pf1N1B4_914at 1039.586 kb on - strand, within Pf1N1B4_914at 1039.630 kb on - strand, within Pf1N1B4_914

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,037,607 + Pf1N1B4_911 0.12 -1.0
1,037,607 + Pf1N1B4_911 0.12 -1.0
1,037,607 + Pf1N1B4_911 0.12 +0.9
1,037,607 + Pf1N1B4_911 0.12 +0.6
1,037,608 - Pf1N1B4_911 0.13 +0.0
1,037,608 - Pf1N1B4_911 0.13 -1.6
1,037,608 - Pf1N1B4_911 0.13 +2.0
1,037,608 - Pf1N1B4_911 0.13 +1.0
1,037,608 - Pf1N1B4_911 0.13 +0.0
1,037,608 - Pf1N1B4_911 0.13 +1.0
1,037,608 - Pf1N1B4_911 0.13 +0.0
1,037,696 - +0.0
1,037,767 + Pf1N1B4_911 0.38 -1.0
1,037,767 + Pf1N1B4_911 0.38 -0.1
1,037,767 + Pf1N1B4_911 0.38 +1.0
1,037,767 + Pf1N1B4_911 0.38 +0.0
1,037,767 + Pf1N1B4_911 0.38 +1.0
1,037,767 + Pf1N1B4_911 0.38 -1.6
1,037,767 + Pf1N1B4_911 0.38 +0.0
1,037,768 - Pf1N1B4_911 0.38 +0.8
1,037,768 - Pf1N1B4_911 0.38 +0.0
1,037,768 - Pf1N1B4_911 0.38 -0.5
1,037,768 - Pf1N1B4_911 0.38 +0.4
1,037,768 - Pf1N1B4_911 0.38 +2.0
1,037,768 - Pf1N1B4_911 0.38 -0.6
1,037,768 - Pf1N1B4_911 0.38 -1.0
1,037,768 - Pf1N1B4_911 0.38 +0.6
1,037,768 - Pf1N1B4_911 0.38 +0.6
1,037,768 - +0.0
1,037,768 - -1.0
1,037,768 - Pf1N1B4_911 0.38 +0.6
1,037,768 - Pf1N1B4_911 0.38 -0.6
1,037,768 - Pf1N1B4_911 0.38 +0.0
1,037,768 - -1.6
1,037,789 - Pf1N1B4_911 0.41 +1.0
1,037,789 - Pf1N1B4_911 0.41 +0.0
1,037,968 + Pf1N1B4_911 0.70 -2.3
1,037,969 - Pf1N1B4_911 0.70 +0.8
1,038,084 + Pf1N1B4_911 0.89 +0.0
1,038,084 + +0.0
1,038,085 - Pf1N1B4_911 0.89 +1.2
1,038,085 - Pf1N1B4_911 0.89 +2.6
1,038,105 + +0.0
1,038,105 + +1.0
1,038,106 - +1.0
1,038,106 - -1.3
1,038,106 - +1.0
1,038,106 - +2.0
1,038,106 - -1.3
1,038,106 - +0.6
1,038,106 - +1.0
1,038,235 + +0.4
1,038,236 - +1.0
1,038,236 - +0.0
1,038,236 - -1.0
1,038,244 - -0.7
1,038,244 - -1.0
1,038,266 - +0.0
1,038,266 - -1.0
1,038,313 + +0.4
1,038,332 + +0.8
1,038,377 + -1.6
1,038,468 + +0.6
1,038,468 + +1.4
1,038,469 - +0.5
1,038,539 + Pf1N1B4_912 0.16 -2.0
1,038,539 + Pf1N1B4_912 0.16 +0.0
1,038,539 + Pf1N1B4_912 0.16 +1.0
1,038,539 + Pf1N1B4_912 0.16 -0.6
1,038,539 + Pf1N1B4_912 0.16 -0.6
1,038,539 + Pf1N1B4_912 0.16 -0.6
1,038,539 + Pf1N1B4_912 0.16 +0.0
1,038,540 - Pf1N1B4_912 0.16 -2.0
1,038,540 - Pf1N1B4_912 0.16 +0.8
1,038,540 - Pf1N1B4_912 0.16 +1.0
1,038,540 - Pf1N1B4_912 0.16 +0.0
1,038,540 - Pf1N1B4_912 0.16 -1.6
1,038,540 - Pf1N1B4_912 0.16 -2.3
1,038,540 - Pf1N1B4_912 0.16 -0.6
1,038,540 - Pf1N1B4_912 0.16 +0.0
1,038,569 + Pf1N1B4_912 0.35 -2.3
1,038,570 - Pf1N1B4_912 0.36 -1.3
1,038,570 - Pf1N1B4_912 0.36 -1.6
1,038,570 - Pf1N1B4_912 0.36 +1.6
1,038,599 + Pf1N1B4_912 0.55 -1.0
1,038,600 - Pf1N1B4_912 0.56 +0.0
1,038,664 - +1.0
1,038,664 - +2.0
1,038,743 - Pf1N1B4_913 0.16 +1.0
1,038,900 - Pf1N1B4_913 0.48 +0.8
1,038,927 + Pf1N1B4_913 0.54 +1.6
1,038,927 + Pf1N1B4_913 0.54 +0.0
1,039,001 + Pf1N1B4_913 0.69 +2.0
1,039,001 + Pf1N1B4_913 0.69 -1.0
1,039,001 + Pf1N1B4_913 0.69 +0.8
1,039,001 + Pf1N1B4_913 0.69 +0.0
1,039,001 + Pf1N1B4_913 0.69 -1.0
1,039,002 - Pf1N1B4_913 0.69 +1.0
1,039,029 - Pf1N1B4_913 0.75 +0.0
1,039,029 - Pf1N1B4_913 0.75 +0.8
1,039,029 - Pf1N1B4_913 0.75 -1.0
1,039,037 + Pf1N1B4_913 0.76 +1.0
1,039,037 + Pf1N1B4_913 0.76 -0.3
1,039,037 + -1.0
1,039,054 + Pf1N1B4_913 0.80 +0.2
1,039,054 + Pf1N1B4_913 0.80 +0.3
1,039,055 - Pf1N1B4_913 0.80 -2.0
1,039,055 - Pf1N1B4_913 0.80 +0.0
1,039,106 + -0.3
1,039,106 + +0.8
1,039,106 + -2.0
1,039,106 + +1.2
1,039,106 + +0.0
1,039,106 + +0.0
1,039,106 + +0.4
1,039,107 - +0.0
1,039,107 - +1.0
1,039,107 - +1.4
1,039,107 - +0.4
1,039,107 - +0.0
1,039,173 + +1.0
1,039,197 + +0.0
1,039,547 - Pf1N1B4_914 0.43 +0.6
1,039,547 - Pf1N1B4_914 0.43 +0.0
1,039,550 + Pf1N1B4_914 0.43 +1.0
1,039,550 + Pf1N1B4_914 0.43 -1.6
1,039,550 + Pf1N1B4_914 0.43 -1.4
1,039,550 + Pf1N1B4_914 0.43 -1.0
1,039,551 - Pf1N1B4_914 0.44 -0.6
1,039,551 - Pf1N1B4_914 0.44 +0.4
1,039,551 - Pf1N1B4_914 0.44 +1.3
1,039,573 - Pf1N1B4_914 0.46 +0.0
1,039,585 + +0.0
1,039,585 + Pf1N1B4_914 0.48 -0.6
1,039,585 + Pf1N1B4_914 0.48 -0.6
1,039,586 - Pf1N1B4_914 0.48 -1.0
1,039,630 - Pf1N1B4_914 0.54 +1.4

Or see this region's nucleotide sequence