Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_910 and Pf1N1B4_911 overlap by 11 nucleotides Pf1N1B4_911 and Pf1N1B4_912 are separated by 359 nucleotides Pf1N1B4_912 and Pf1N1B4_913 overlap by 4 nucleotides Pf1N1B4_913 and Pf1N1B4_914 are separated by 65 nucleotides
Pf1N1B4_910 - Cyanate transport protein CynX, at 1,036,223 to 1,037,539
_910
Pf1N1B4_911 - Transcriptional regulator, GntR family, at 1,037,529 to 1,038,155
_911
Pf1N1B4_912 - Toxin mRNA interferase YgiU, at 1,038,515 to 1,038,667
_912
Pf1N1B4_913 - FIG00958224: hypothetical protein, at 1,038,664 to 1,039,152
_913
Pf1N1B4_914 - ABC-type polar amino acid transport system, ATPase component, at 1,039,218 to 1,039,982
_914
Position (kb)
1038
1039 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1037.607 kb on + strand, within Pf1N1B4_911 at 1037.607 kb on + strand, within Pf1N1B4_911 at 1037.607 kb on + strand, within Pf1N1B4_911 at 1037.607 kb on + strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.608 kb on - strand, within Pf1N1B4_911 at 1037.696 kb on - strand at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.767 kb on + strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand at 1037.768 kb on - strand at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand, within Pf1N1B4_911 at 1037.768 kb on - strand at 1037.789 kb on - strand, within Pf1N1B4_911 at 1037.789 kb on - strand, within Pf1N1B4_911 at 1037.968 kb on + strand, within Pf1N1B4_911 at 1037.969 kb on - strand, within Pf1N1B4_911 at 1038.084 kb on + strand, within Pf1N1B4_911 at 1038.084 kb on + strand at 1038.085 kb on - strand, within Pf1N1B4_911 at 1038.085 kb on - strand, within Pf1N1B4_911 at 1038.105 kb on + strand at 1038.105 kb on + strand at 1038.106 kb on - strand at 1038.106 kb on - strand at 1038.106 kb on - strand at 1038.106 kb on - strand at 1038.106 kb on - strand at 1038.106 kb on - strand at 1038.106 kb on - strand at 1038.235 kb on + strand at 1038.236 kb on - strand at 1038.236 kb on - strand at 1038.236 kb on - strand at 1038.244 kb on - strand at 1038.244 kb on - strand at 1038.266 kb on - strand at 1038.266 kb on - strand at 1038.313 kb on + strand at 1038.332 kb on + strand at 1038.377 kb on + strand at 1038.468 kb on + strand at 1038.468 kb on + strand at 1038.469 kb on - strand at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.539 kb on + strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.540 kb on - strand, within Pf1N1B4_912 at 1038.569 kb on + strand, within Pf1N1B4_912 at 1038.570 kb on - strand, within Pf1N1B4_912 at 1038.570 kb on - strand, within Pf1N1B4_912 at 1038.570 kb on - strand, within Pf1N1B4_912 at 1038.599 kb on + strand, within Pf1N1B4_912 at 1038.600 kb on - strand, within Pf1N1B4_912 at 1038.664 kb on - strand at 1038.664 kb on - strand at 1038.743 kb on - strand, within Pf1N1B4_913 at 1038.900 kb on - strand, within Pf1N1B4_913 at 1038.927 kb on + strand, within Pf1N1B4_913 at 1038.927 kb on + strand, within Pf1N1B4_913 at 1039.001 kb on + strand, within Pf1N1B4_913 at 1039.001 kb on + strand, within Pf1N1B4_913 at 1039.001 kb on + strand, within Pf1N1B4_913 at 1039.001 kb on + strand, within Pf1N1B4_913 at 1039.001 kb on + strand, within Pf1N1B4_913 at 1039.002 kb on - strand, within Pf1N1B4_913 at 1039.029 kb on - strand, within Pf1N1B4_913 at 1039.029 kb on - strand, within Pf1N1B4_913 at 1039.029 kb on - strand, within Pf1N1B4_913 at 1039.037 kb on + strand, within Pf1N1B4_913 at 1039.037 kb on + strand, within Pf1N1B4_913 at 1039.037 kb on + strand at 1039.054 kb on + strand, within Pf1N1B4_913 at 1039.054 kb on + strand, within Pf1N1B4_913 at 1039.055 kb on - strand, within Pf1N1B4_913 at 1039.055 kb on - strand, within Pf1N1B4_913 at 1039.106 kb on + strand at 1039.106 kb on + strand at 1039.106 kb on + strand at 1039.106 kb on + strand at 1039.106 kb on + strand at 1039.106 kb on + strand at 1039.106 kb on + strand at 1039.107 kb on - strand at 1039.107 kb on - strand at 1039.107 kb on - strand at 1039.107 kb on - strand at 1039.107 kb on - strand at 1039.173 kb on + strand at 1039.197 kb on + strand at 1039.547 kb on - strand, within Pf1N1B4_914 at 1039.547 kb on - strand, within Pf1N1B4_914 at 1039.550 kb on + strand, within Pf1N1B4_914 at 1039.550 kb on + strand, within Pf1N1B4_914 at 1039.550 kb on + strand, within Pf1N1B4_914 at 1039.550 kb on + strand, within Pf1N1B4_914 at 1039.551 kb on - strand, within Pf1N1B4_914 at 1039.551 kb on - strand, within Pf1N1B4_914 at 1039.551 kb on - strand, within Pf1N1B4_914 at 1039.573 kb on - strand, within Pf1N1B4_914 at 1039.585 kb on + strand at 1039.585 kb on + strand, within Pf1N1B4_914 at 1039.585 kb on + strand, within Pf1N1B4_914 at 1039.586 kb on - strand, within Pf1N1B4_914 at 1039.630 kb on - strand, within Pf1N1B4_914
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,037,607 + Pf1N1B4_911 0.12 -1.0 1,037,607 + Pf1N1B4_911 0.12 -1.0 1,037,607 + Pf1N1B4_911 0.12 +0.9 1,037,607 + Pf1N1B4_911 0.12 +0.6 1,037,608 - Pf1N1B4_911 0.13 +0.0 1,037,608 - Pf1N1B4_911 0.13 -1.6 1,037,608 - Pf1N1B4_911 0.13 +2.0 1,037,608 - Pf1N1B4_911 0.13 +1.0 1,037,608 - Pf1N1B4_911 0.13 +0.0 1,037,608 - Pf1N1B4_911 0.13 +1.0 1,037,608 - Pf1N1B4_911 0.13 +0.0 1,037,696 - +0.0 1,037,767 + Pf1N1B4_911 0.38 -1.0 1,037,767 + Pf1N1B4_911 0.38 -0.1 1,037,767 + Pf1N1B4_911 0.38 +1.0 1,037,767 + Pf1N1B4_911 0.38 +0.0 1,037,767 + Pf1N1B4_911 0.38 +1.0 1,037,767 + Pf1N1B4_911 0.38 -1.6 1,037,767 + Pf1N1B4_911 0.38 +0.0 1,037,768 - Pf1N1B4_911 0.38 +0.8 1,037,768 - Pf1N1B4_911 0.38 +0.0 1,037,768 - Pf1N1B4_911 0.38 -0.5 1,037,768 - Pf1N1B4_911 0.38 +0.4 1,037,768 - Pf1N1B4_911 0.38 +2.0 1,037,768 - Pf1N1B4_911 0.38 -0.6 1,037,768 - Pf1N1B4_911 0.38 -1.0 1,037,768 - Pf1N1B4_911 0.38 +0.6 1,037,768 - Pf1N1B4_911 0.38 +0.6 1,037,768 - +0.0 1,037,768 - -1.0 1,037,768 - Pf1N1B4_911 0.38 +0.6 1,037,768 - Pf1N1B4_911 0.38 -0.6 1,037,768 - Pf1N1B4_911 0.38 +0.0 1,037,768 - -1.6 1,037,789 - Pf1N1B4_911 0.41 +1.0 1,037,789 - Pf1N1B4_911 0.41 +0.0 1,037,968 + Pf1N1B4_911 0.70 -2.3 1,037,969 - Pf1N1B4_911 0.70 +0.8 1,038,084 + Pf1N1B4_911 0.89 +0.0 1,038,084 + +0.0 1,038,085 - Pf1N1B4_911 0.89 +1.2 1,038,085 - Pf1N1B4_911 0.89 +2.6 1,038,105 + +0.0 1,038,105 + +1.0 1,038,106 - +1.0 1,038,106 - -1.3 1,038,106 - +1.0 1,038,106 - +2.0 1,038,106 - -1.3 1,038,106 - +0.6 1,038,106 - +1.0 1,038,235 + +0.4 1,038,236 - +1.0 1,038,236 - +0.0 1,038,236 - -1.0 1,038,244 - -0.7 1,038,244 - -1.0 1,038,266 - +0.0 1,038,266 - -1.0 1,038,313 + +0.4 1,038,332 + +0.8 1,038,377 + -1.6 1,038,468 + +0.6 1,038,468 + +1.4 1,038,469 - +0.5 1,038,539 + Pf1N1B4_912 0.16 -2.0 1,038,539 + Pf1N1B4_912 0.16 +0.0 1,038,539 + Pf1N1B4_912 0.16 +1.0 1,038,539 + Pf1N1B4_912 0.16 -0.6 1,038,539 + Pf1N1B4_912 0.16 -0.6 1,038,539 + Pf1N1B4_912 0.16 -0.6 1,038,539 + Pf1N1B4_912 0.16 +0.0 1,038,540 - Pf1N1B4_912 0.16 -2.0 1,038,540 - Pf1N1B4_912 0.16 +0.8 1,038,540 - Pf1N1B4_912 0.16 +1.0 1,038,540 - Pf1N1B4_912 0.16 +0.0 1,038,540 - Pf1N1B4_912 0.16 -1.6 1,038,540 - Pf1N1B4_912 0.16 -2.3 1,038,540 - Pf1N1B4_912 0.16 -0.6 1,038,540 - Pf1N1B4_912 0.16 +0.0 1,038,569 + Pf1N1B4_912 0.35 -2.3 1,038,570 - Pf1N1B4_912 0.36 -1.3 1,038,570 - Pf1N1B4_912 0.36 -1.6 1,038,570 - Pf1N1B4_912 0.36 +1.6 1,038,599 + Pf1N1B4_912 0.55 -1.0 1,038,600 - Pf1N1B4_912 0.56 +0.0 1,038,664 - +1.0 1,038,664 - +2.0 1,038,743 - Pf1N1B4_913 0.16 +1.0 1,038,900 - Pf1N1B4_913 0.48 +0.8 1,038,927 + Pf1N1B4_913 0.54 +1.6 1,038,927 + Pf1N1B4_913 0.54 +0.0 1,039,001 + Pf1N1B4_913 0.69 +2.0 1,039,001 + Pf1N1B4_913 0.69 -1.0 1,039,001 + Pf1N1B4_913 0.69 +0.8 1,039,001 + Pf1N1B4_913 0.69 +0.0 1,039,001 + Pf1N1B4_913 0.69 -1.0 1,039,002 - Pf1N1B4_913 0.69 +1.0 1,039,029 - Pf1N1B4_913 0.75 +0.0 1,039,029 - Pf1N1B4_913 0.75 +0.8 1,039,029 - Pf1N1B4_913 0.75 -1.0 1,039,037 + Pf1N1B4_913 0.76 +1.0 1,039,037 + Pf1N1B4_913 0.76 -0.3 1,039,037 + -1.0 1,039,054 + Pf1N1B4_913 0.80 +0.2 1,039,054 + Pf1N1B4_913 0.80 +0.3 1,039,055 - Pf1N1B4_913 0.80 -2.0 1,039,055 - Pf1N1B4_913 0.80 +0.0 1,039,106 + -0.3 1,039,106 + +0.8 1,039,106 + -2.0 1,039,106 + +1.2 1,039,106 + +0.0 1,039,106 + +0.0 1,039,106 + +0.4 1,039,107 - +0.0 1,039,107 - +1.0 1,039,107 - +1.4 1,039,107 - +0.4 1,039,107 - +0.0 1,039,173 + +1.0 1,039,197 + +0.0 1,039,547 - Pf1N1B4_914 0.43 +0.6 1,039,547 - Pf1N1B4_914 0.43 +0.0 1,039,550 + Pf1N1B4_914 0.43 +1.0 1,039,550 + Pf1N1B4_914 0.43 -1.6 1,039,550 + Pf1N1B4_914 0.43 -1.4 1,039,550 + Pf1N1B4_914 0.43 -1.0 1,039,551 - Pf1N1B4_914 0.44 -0.6 1,039,551 - Pf1N1B4_914 0.44 +0.4 1,039,551 - Pf1N1B4_914 0.44 +1.3 1,039,573 - Pf1N1B4_914 0.46 +0.0 1,039,585 + +0.0 1,039,585 + Pf1N1B4_914 0.48 -0.6 1,039,585 + Pf1N1B4_914 0.48 -0.6 1,039,586 - Pf1N1B4_914 0.48 -1.0 1,039,630 - Pf1N1B4_914 0.54 +1.4
Or see this region's nucleotide sequence