Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_629

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5174 and Pf1N1B4_628 are separated by 63 nucleotidesPf1N1B4_628 and Pf1N1B4_629 are separated by 13 nucleotidesPf1N1B4_629 and Pf1N1B4_630 are separated by 166 nucleotides Pf1N1B4_5174 - tRNA-Lys-TTT, at 725,744 to 725,816 _5174 Pf1N1B4_628 - Queuosine Biosynthesis QueC ATPase, at 725,880 to 726,560 _628 Pf1N1B4_629 - Queuosine Biosynthesis QueE Radical SAM, at 726,574 to 727,221 _629 Pf1N1B4_630 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 727,388 to 728,152 _630 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2 3at 725.576 kb on - strandat 725.576 kb on - strandat 725.576 kb on - strandat 725.715 kb on - strandat 725.715 kb on - strandat 725.715 kb on - strandat 725.715 kb on - strandat 725.887 kb on + strandat 725.887 kb on + strandat 725.955 kb on - strand, within Pf1N1B4_628at 726.096 kb on + strand, within Pf1N1B4_628at 726.097 kb on - strand, within Pf1N1B4_628at 726.097 kb on - strand, within Pf1N1B4_628at 726.176 kb on - strand, within Pf1N1B4_628at 726.176 kb on - strand, within Pf1N1B4_628at 726.274 kb on + strand, within Pf1N1B4_628at 726.274 kb on + strand, within Pf1N1B4_628at 726.274 kb on + strand, within Pf1N1B4_628at 726.274 kb on + strand, within Pf1N1B4_628at 726.275 kb on - strand, within Pf1N1B4_628at 726.275 kb on - strand, within Pf1N1B4_628at 726.275 kb on - strand, within Pf1N1B4_628at 726.320 kb on + strand, within Pf1N1B4_628at 726.320 kb on + strand, within Pf1N1B4_628at 726.321 kb on - strand, within Pf1N1B4_628at 726.321 kb on - strand, within Pf1N1B4_628at 726.321 kb on - strand, within Pf1N1B4_628at 726.321 kb on - strand, within Pf1N1B4_628at 726.321 kb on - strand, within Pf1N1B4_628at 726.321 kb on - strand, within Pf1N1B4_628at 726.446 kb on - strand, within Pf1N1B4_628at 726.463 kb on + strand, within Pf1N1B4_628at 726.463 kb on + strand, within Pf1N1B4_628at 726.463 kb on + strand, within Pf1N1B4_628at 726.464 kb on - strand, within Pf1N1B4_628at 726.464 kb on - strand, within Pf1N1B4_628at 726.602 kb on + strandat 726.602 kb on + strandat 726.602 kb on + strandat 726.603 kb on - strandat 726.603 kb on - strandat 726.603 kb on - strandat 726.603 kb on - strandat 726.606 kb on + strandat 726.606 kb on + strandat 726.606 kb on + strandat 726.606 kb on + strandat 726.606 kb on + strandat 726.606 kb on + strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.607 kb on - strandat 726.761 kb on + strand, within Pf1N1B4_629at 726.791 kb on - strand, within Pf1N1B4_629at 727.019 kb on + strand, within Pf1N1B4_629at 727.020 kb on - strand, within Pf1N1B4_629at 727.221 kb on + strandat 727.221 kb on + strandat 727.243 kb on + strandat 727.243 kb on + strandat 727.243 kb on + strandat 727.244 kb on - strandat 727.244 kb on - strandat 727.318 kb on - strandat 727.389 kb on + strandat 727.389 kb on + strandat 727.389 kb on + strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.390 kb on - strandat 727.519 kb on - strand, within Pf1N1B4_630at 727.740 kb on + strandat 727.740 kb on + strand, within Pf1N1B4_630at 727.740 kb on + strand, within Pf1N1B4_630at 727.740 kb on + strand, within Pf1N1B4_630at 727.741 kb on - strand, within Pf1N1B4_630at 727.741 kb on - strand, within Pf1N1B4_630at 727.741 kb on - strand, within Pf1N1B4_630at 727.741 kb on - strand, within Pf1N1B4_630at 727.741 kb on - strand, within Pf1N1B4_630at 727.741 kb on - strand, within Pf1N1B4_630at 727.744 kb on - strand, within Pf1N1B4_630at 727.744 kb on - strand, within Pf1N1B4_630at 727.744 kb on - strand, within Pf1N1B4_630at 727.744 kb on - strand, within Pf1N1B4_630at 727.867 kb on + strand, within Pf1N1B4_630at 727.901 kb on + strand, within Pf1N1B4_630at 727.902 kb on - strand, within Pf1N1B4_630at 728.077 kb on - strandat 728.114 kb on - strandat 728.114 kb on - strandat 728.114 kb on - strandat 728.114 kb on - strandat 728.114 kb on - strandat 728.114 kb on - strandat 728.114 kb on - strandat 728.129 kb on - strandat 728.129 kb on - strandat 728.205 kb on - strandat 728.205 kb on - strandat 728.205 kb on - strandat 728.205 kb on - strandat 728.205 kb on - strandat 728.205 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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725,576 - -0.4
725,576 - -1.0
725,576 - -0.0
725,715 - -2.6
725,715 - -1.0
725,715 - +1.6
725,715 - +1.9
725,887 + +1.0
725,887 + +0.4
725,955 - Pf1N1B4_628 0.11 +1.0
726,096 + Pf1N1B4_628 0.32 +0.7
726,097 - Pf1N1B4_628 0.32 +1.0
726,097 - Pf1N1B4_628 0.32 -0.7
726,176 - Pf1N1B4_628 0.43 -0.6
726,176 - Pf1N1B4_628 0.43 +1.0
726,274 + Pf1N1B4_628 0.58 -0.4
726,274 + Pf1N1B4_628 0.58 -0.6
726,274 + Pf1N1B4_628 0.58 +1.6
726,274 + Pf1N1B4_628 0.58 -1.0
726,275 - Pf1N1B4_628 0.58 -0.0
726,275 - Pf1N1B4_628 0.58 -0.6
726,275 - Pf1N1B4_628 0.58 -0.0
726,320 + Pf1N1B4_628 0.65 -1.6
726,320 + Pf1N1B4_628 0.65 -0.4
726,321 - Pf1N1B4_628 0.65 -1.0
726,321 - Pf1N1B4_628 0.65 -0.4
726,321 - Pf1N1B4_628 0.65 +1.0
726,321 - Pf1N1B4_628 0.65 -1.6
726,321 - Pf1N1B4_628 0.65 +1.0
726,321 - Pf1N1B4_628 0.65 +0.6
726,446 - Pf1N1B4_628 0.83 -0.0
726,463 + Pf1N1B4_628 0.86 -1.0
726,463 + Pf1N1B4_628 0.86 -1.0
726,463 + Pf1N1B4_628 0.86 -0.0
726,464 - Pf1N1B4_628 0.86 -0.0
726,464 - Pf1N1B4_628 0.86 -0.6
726,602 + -1.8
726,602 + +1.0
726,602 + -1.0
726,603 - -1.0
726,603 - -0.0
726,603 - +2.3
726,603 - -0.0
726,606 + -1.3
726,606 + +1.6
726,606 + -0.4
726,606 + -0.0
726,606 + +0.7
726,606 + -1.6
726,607 - +1.4
726,607 - -0.0
726,607 - -1.3
726,607 - +1.4
726,607 - +2.2
726,607 - -0.0
726,607 - -1.0
726,607 - +2.3
726,607 - -0.0
726,607 - -1.0
726,607 - -0.6
726,761 + Pf1N1B4_629 0.29 -1.0
726,791 - Pf1N1B4_629 0.33 -1.1
727,019 + Pf1N1B4_629 0.69 -1.0
727,020 - Pf1N1B4_629 0.69 -1.6
727,221 + +0.6
727,221 + +1.0
727,243 + -0.0
727,243 + +0.4
727,243 + +0.6
727,244 - +1.0
727,244 - -0.6
727,318 - +0.6
727,389 + +1.0
727,389 + -0.0
727,389 + -0.4
727,390 - -0.0
727,390 - +2.8
727,390 - +0.2
727,390 - -0.0
727,390 - +2.6
727,390 - +0.6
727,390 - +3.0
727,390 - -1.0
727,519 - Pf1N1B4_630 0.17 +1.3
727,740 + -0.0
727,740 + Pf1N1B4_630 0.46 +2.0
727,740 + Pf1N1B4_630 0.46 -0.0
727,740 + Pf1N1B4_630 0.46 -1.0
727,741 - Pf1N1B4_630 0.46 +1.6
727,741 - Pf1N1B4_630 0.46 -1.0
727,741 - Pf1N1B4_630 0.46 +2.7
727,741 - Pf1N1B4_630 0.46 +1.6
727,741 - Pf1N1B4_630 0.46 -1.6
727,741 - Pf1N1B4_630 0.46 +0.7
727,744 - Pf1N1B4_630 0.47 -0.6
727,744 - Pf1N1B4_630 0.47 +0.3
727,744 - Pf1N1B4_630 0.47 +0.3
727,744 - Pf1N1B4_630 0.47 +1.0
727,867 + Pf1N1B4_630 0.63 -0.0
727,901 + Pf1N1B4_630 0.67 -0.8
727,902 - Pf1N1B4_630 0.67 +2.0
728,077 - -1.0
728,114 - -1.6
728,114 - -1.6
728,114 - +1.0
728,114 - -1.0
728,114 - -0.0
728,114 - -0.0
728,114 - -1.0
728,129 - -1.6
728,129 - -2.6
728,205 - +1.0
728,205 - +1.3
728,205 - -1.0
728,205 - +0.1
728,205 - -0.6
728,205 - -0.0

Or see this region's nucleotide sequence