Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5482 and Pf1N1B4_5483 are separated by 865 nucleotides Pf1N1B4_5483 and Pf1N1B4_5484 are separated by 397 nucleotides
Pf1N1B4_5482 - hypothetical protein, at 232,189 to 232,308
_5482
Pf1N1B4_5483 - hypothetical protein, at 233,174 to 233,398
_5483
Pf1N1B4_5484 - hypothetical protein, at 233,796 to 233,912
_5484
Position (kb) 233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 232.375 kb on - strand at 232.461 kb on - strand at 232.465 kb on - strand at 232.465 kb on - strand at 232.465 kb on - strand at 232.465 kb on - strand at 232.465 kb on - strand at 232.664 kb on + strand at 232.664 kb on + strand at 232.664 kb on + strand at 232.665 kb on - strand at 232.665 kb on - strand at 232.665 kb on - strand at 232.665 kb on - strand at 232.665 kb on - strand at 232.673 kb on + strand at 232.674 kb on - strand at 232.674 kb on - strand at 232.733 kb on + strand at 232.759 kb on + strand at 232.759 kb on + strand at 232.760 kb on - strand at 232.760 kb on - strand at 232.784 kb on + strand at 232.828 kb on + strand at 232.829 kb on - strand at 232.843 kb on - strand at 232.843 kb on - strand at 232.862 kb on - strand at 232.950 kb on + strand at 232.950 kb on + strand at 232.950 kb on + strand at 232.964 kb on + strand at 233.061 kb on - strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.069 kb on + strand at 233.073 kb on + strand at 233.073 kb on + strand at 233.073 kb on + strand at 233.073 kb on + strand at 233.073 kb on + strand at 233.074 kb on - strand at 233.074 kb on - strand at 233.074 kb on - strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.117 kb on + strand at 233.123 kb on + strand at 233.123 kb on + strand at 233.123 kb on + strand at 233.123 kb on + strand at 233.123 kb on + strand at 233.124 kb on - strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.165 kb on + strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.166 kb on - strand at 233.277 kb on + strand, within Pf1N1B4_5483 at 233.277 kb on + strand, within Pf1N1B4_5483 at 233.277 kb on + strand at 233.277 kb on + strand, within Pf1N1B4_5483 at 233.278 kb on - strand, within Pf1N1B4_5483 at 233.351 kb on + strand, within Pf1N1B4_5483 at 233.417 kb on + strand at 233.462 kb on + strand at 233.462 kb on + strand at 233.462 kb on + strand at 233.467 kb on + strand at 233.467 kb on + strand at 233.467 kb on + strand at 233.468 kb on - strand at 233.558 kb on - strand at 233.657 kb on - strand at 233.657 kb on - strand at 233.657 kb on - strand at 233.657 kb on - strand at 233.657 kb on - strand at 233.665 kb on + strand at 233.665 kb on + strand at 233.666 kb on - strand at 233.741 kb on + strand at 233.741 kb on + strand at 233.741 kb on + strand at 233.741 kb on + strand at 233.741 kb on + strand at 233.742 kb on - strand at 233.742 kb on - strand at 233.742 kb on - strand at 233.782 kb on + strand at 233.782 kb on + strand at 233.782 kb on + strand at 233.782 kb on + strand at 233.782 kb on + strand at 233.782 kb on + strand at 233.783 kb on - strand at 233.783 kb on - strand at 233.783 kb on - strand at 233.786 kb on + strand at 233.786 kb on + strand at 233.786 kb on + strand at 233.786 kb on + strand at 233.787 kb on - strand at 233.787 kb on - strand at 233.787 kb on - strand at 233.909 kb on - strand at 234.021 kb on - strand at 234.114 kb on + strand at 234.115 kb on - strand at 234.115 kb on - strand at 234.115 kb on - strand at 234.121 kb on + strand at 234.121 kb on + strand at 234.121 kb on + strand at 234.122 kb on - strand at 234.122 kb on - strand at 234.159 kb on - strand at 234.168 kb on + strand at 234.169 kb on - strand at 234.169 kb on - strand at 234.233 kb on + strand at 234.394 kb on + strand at 234.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 232,375 - +1.8 232,461 - +2.8 232,465 - -1.2 232,465 - +1.2 232,465 - -0.4 232,465 - +0.2 232,465 - +0.2 232,664 + +0.9 232,664 + -0.4 232,664 + +0.8 232,665 - -0.8 232,665 - -0.8 232,665 - +1.2 232,665 - +0.6 232,665 - +0.2 232,673 + -0.1 232,674 - -0.5 232,674 - +0.2 232,733 + -2.1 232,759 + +0.2 232,759 + +1.2 232,760 - -1.8 232,760 - -0.8 232,784 + +0.9 232,828 + -0.8 232,829 - -0.8 232,843 - +0.2 232,843 - +0.2 232,862 - +0.2 232,950 + +1.2 232,950 + +0.2 232,950 + +0.2 232,964 + +1.4 233,061 - +0.9 233,069 + -0.1 233,069 + -0.4 233,069 + +0.2 233,069 + +0.6 233,069 + +0.2 233,069 + +0.2 233,069 + +0.7 233,069 + +0.2 233,073 + +0.2 233,073 + +0.8 233,073 + -0.8 233,073 + -1.1 233,073 + +0.2 233,074 - +1.2 233,074 - +0.2 233,074 - -1.4 233,117 + -0.8 233,117 + +0.2 233,117 + +0.2 233,117 + +0.2 233,117 + +2.2 233,117 + +1.8 233,117 + +0.5 233,117 + -0.4 233,117 + +0.2 233,117 + -0.6 233,117 + +0.8 233,117 + +0.2 233,123 + -0.2 233,123 + +2.2 233,123 + +0.8 233,123 + +0.6 233,123 + +0.2 233,124 - -0.1 233,165 + +2.2 233,165 + -0.8 233,165 + -0.2 233,165 + +0.2 233,165 + +1.2 233,165 + +0.1 233,165 + +1.2 233,165 + +0.2 233,165 + +1.8 233,165 + +1.5 233,165 + -1.8 233,165 + -1.8 233,165 + +0.6 233,165 + +0.2 233,165 + +0.2 233,165 + +0.2 233,165 + -0.8 233,165 + +0.2 233,165 + +0.2 233,166 - +1.8 233,166 - +0.2 233,166 - +1.2 233,166 - +0.2 233,166 - +1.2 233,166 - +0.5 233,166 - -0.8 233,166 - +0.2 233,166 - +0.2 233,277 + Pf1N1B4_5483 0.46 -0.8 233,277 + Pf1N1B4_5483 0.46 -0.8 233,277 + +0.2 233,277 + Pf1N1B4_5483 0.46 -0.5 233,278 - Pf1N1B4_5483 0.46 +2.2 233,351 + Pf1N1B4_5483 0.79 -0.8 233,417 + -0.6 233,462 + +0.2 233,462 + -0.1 233,462 + +1.2 233,467 + +1.2 233,467 + +0.2 233,467 + +1.2 233,468 - -0.8 233,558 - +1.2 233,657 - -0.2 233,657 - +0.4 233,657 - +0.8 233,657 - +0.2 233,657 - -0.8 233,665 + +0.2 233,665 + +0.2 233,666 - +0.2 233,741 + -0.8 233,741 + +0.2 233,741 + -0.8 233,741 + +0.2 233,741 + +0.2 233,742 - +0.5 233,742 - +0.6 233,742 - -0.8 233,782 + +0.8 233,782 + +0.2 233,782 + +1.2 233,782 + +1.2 233,782 + -0.7 233,782 + +0.2 233,783 - +0.2 233,783 - -0.2 233,783 - -0.4 233,786 + -0.2 233,786 + +0.2 233,786 + +1.2 233,786 + -0.8 233,787 - +0.1 233,787 - -0.4 233,787 - +0.8 233,909 - +0.2 234,021 - -0.2 234,114 + +1.5 234,115 - -0.4 234,115 - +0.2 234,115 - -0.8 234,121 + -0.5 234,121 + +1.2 234,121 + +0.8 234,122 - +0.2 234,122 - -2.1 234,159 - +0.8 234,168 + -0.2 234,169 - +1.2 234,169 - +2.2 234,233 + -1.8 234,394 + +2.5 234,398 - +2.2
Or see this region's nucleotide sequence