Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_524

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_522 and Pf1N1B4_523 are separated by 114 nucleotidesPf1N1B4_523 and Pf1N1B4_524 are separated by 4 nucleotidesPf1N1B4_524 and Pf1N1B4_525 are separated by 310 nucleotides Pf1N1B4_522 - HlyD family secretion protein, at 621,288 to 622,652 _522 Pf1N1B4_523 - FIG00955751: hypothetical protein, at 622,767 to 623,360 _523 Pf1N1B4_524 - Transcriptional regulator GbuR, at 623,365 to 624,258 _524 Pf1N1B4_525 - Agmatinase (EC 3.5.3.11), at 624,569 to 625,519 _525 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 622.392 kb on + strand, within Pf1N1B4_522at 622.398 kb on + strandat 622.407 kb on + strand, within Pf1N1B4_522at 622.408 kb on - strand, within Pf1N1B4_522at 622.480 kb on - strand, within Pf1N1B4_522at 622.480 kb on - strandat 622.571 kb on + strandat 622.571 kb on + strandat 622.571 kb on + strandat 622.599 kb on + strandat 622.599 kb on + strandat 622.608 kb on - strandat 623.062 kb on - strand, within Pf1N1B4_523at 623.083 kb on + strand, within Pf1N1B4_523at 623.083 kb on + strand, within Pf1N1B4_523at 623.084 kb on - strand, within Pf1N1B4_523at 623.366 kb on + strandat 623.366 kb on + strandat 623.367 kb on - strandat 623.367 kb on - strandat 623.494 kb on + strand, within Pf1N1B4_524at 623.494 kb on + strand, within Pf1N1B4_524at 623.494 kb on + strand, within Pf1N1B4_524at 623.525 kb on + strand, within Pf1N1B4_524at 623.541 kb on - strand, within Pf1N1B4_524at 623.549 kb on + strand, within Pf1N1B4_524at 623.549 kb on + strand, within Pf1N1B4_524at 623.550 kb on - strand, within Pf1N1B4_524at 623.550 kb on - strand, within Pf1N1B4_524at 623.550 kb on - strand, within Pf1N1B4_524at 623.550 kb on - strand, within Pf1N1B4_524at 623.586 kb on + strand, within Pf1N1B4_524at 623.586 kb on + strand, within Pf1N1B4_524at 623.586 kb on + strand, within Pf1N1B4_524at 623.586 kb on + strand, within Pf1N1B4_524at 623.587 kb on - strand, within Pf1N1B4_524at 623.694 kb on + strand, within Pf1N1B4_524at 623.695 kb on - strandat 623.765 kb on + strand, within Pf1N1B4_524at 623.765 kb on + strand, within Pf1N1B4_524at 623.765 kb on + strand, within Pf1N1B4_524at 623.766 kb on - strand, within Pf1N1B4_524at 623.766 kb on - strand, within Pf1N1B4_524at 623.846 kb on + strand, within Pf1N1B4_524at 623.846 kb on + strand, within Pf1N1B4_524at 623.897 kb on + strand, within Pf1N1B4_524at 624.002 kb on + strandat 624.002 kb on + strand, within Pf1N1B4_524at 624.002 kb on + strand, within Pf1N1B4_524at 624.003 kb on - strand, within Pf1N1B4_524at 624.140 kb on + strand, within Pf1N1B4_524at 624.140 kb on + strand, within Pf1N1B4_524at 624.140 kb on + strand, within Pf1N1B4_524at 624.141 kb on - strand, within Pf1N1B4_524at 624.141 kb on - strand, within Pf1N1B4_524at 624.141 kb on - strand, within Pf1N1B4_524at 624.141 kb on - strand, within Pf1N1B4_524at 624.229 kb on + strandat 624.229 kb on + strandat 624.277 kb on - strandat 624.277 kb on - strandat 624.399 kb on + strandat 624.400 kb on - strandat 624.408 kb on - strandat 624.445 kb on + strandat 624.445 kb on + strandat 624.446 kb on - strandat 624.479 kb on + strandat 624.479 kb on + strandat 624.538 kb on + strandat 624.538 kb on + strandat 624.538 kb on + strandat 624.538 kb on + strandat 624.539 kb on - strandat 624.539 kb on - strandat 624.542 kb on + strandat 624.542 kb on + strandat 624.543 kb on - strandat 624.779 kb on + strand, within Pf1N1B4_525at 624.780 kb on - strand, within Pf1N1B4_525at 624.780 kb on - strand, within Pf1N1B4_525at 624.894 kb on - strand, within Pf1N1B4_525at 624.979 kb on + strand, within Pf1N1B4_525at 624.980 kb on - strand, within Pf1N1B4_525at 625.086 kb on + strand, within Pf1N1B4_525at 625.087 kb on - strand, within Pf1N1B4_525at 625.145 kb on + strand, within Pf1N1B4_525at 625.145 kb on + strand, within Pf1N1B4_525at 625.146 kb on - strand, within Pf1N1B4_525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
622,392 + Pf1N1B4_522 0.81 -0.0
622,398 + -0.0
622,407 + Pf1N1B4_522 0.82 -0.0
622,408 - Pf1N1B4_522 0.82 -0.6
622,480 - Pf1N1B4_522 0.87 -0.5
622,480 - -0.0
622,571 + -0.0
622,571 + -1.6
622,571 + +0.6
622,599 + +0.6
622,599 + -0.0
622,608 - +1.0
623,062 - Pf1N1B4_523 0.50 -2.0
623,083 + Pf1N1B4_523 0.53 +1.0
623,083 + Pf1N1B4_523 0.53 -1.0
623,084 - Pf1N1B4_523 0.53 -0.0
623,366 + -0.0
623,366 + +1.0
623,367 - -1.6
623,367 - -0.6
623,494 + Pf1N1B4_524 0.14 +1.8
623,494 + Pf1N1B4_524 0.14 -0.0
623,494 + Pf1N1B4_524 0.14 -0.0
623,525 + Pf1N1B4_524 0.18 +0.4
623,541 - Pf1N1B4_524 0.20 +2.0
623,549 + Pf1N1B4_524 0.21 -0.0
623,549 + Pf1N1B4_524 0.21 -0.6
623,550 - Pf1N1B4_524 0.21 +1.0
623,550 - Pf1N1B4_524 0.21 -2.0
623,550 - Pf1N1B4_524 0.21 -0.0
623,550 - Pf1N1B4_524 0.21 -1.3
623,586 + Pf1N1B4_524 0.25 +1.0
623,586 + Pf1N1B4_524 0.25 -2.0
623,586 + Pf1N1B4_524 0.25 +1.0
623,586 + Pf1N1B4_524 0.25 -0.0
623,587 - Pf1N1B4_524 0.25 +0.1
623,694 + Pf1N1B4_524 0.37 +0.3
623,695 - -0.0
623,765 + Pf1N1B4_524 0.45 -0.0
623,765 + Pf1N1B4_524 0.45 -0.6
623,765 + Pf1N1B4_524 0.45 +0.6
623,766 - Pf1N1B4_524 0.45 -0.4
623,766 - Pf1N1B4_524 0.45 +1.7
623,846 + Pf1N1B4_524 0.54 -1.6
623,846 + Pf1N1B4_524 0.54 -0.6
623,897 + Pf1N1B4_524 0.60 +1.0
624,002 + +2.0
624,002 + Pf1N1B4_524 0.71 -0.0
624,002 + Pf1N1B4_524 0.71 -1.6
624,003 - Pf1N1B4_524 0.71 -0.0
624,140 + Pf1N1B4_524 0.87 +1.6
624,140 + Pf1N1B4_524 0.87 +1.0
624,140 + Pf1N1B4_524 0.87 -0.0
624,141 - Pf1N1B4_524 0.87 +1.1
624,141 - Pf1N1B4_524 0.87 +1.0
624,141 - Pf1N1B4_524 0.87 +1.0
624,141 - Pf1N1B4_524 0.87 +0.4
624,229 + +1.3
624,229 + -1.0
624,277 - +1.0
624,277 - -0.4
624,399 + -1.6
624,400 - -0.0
624,408 - -0.6
624,445 + +1.0
624,445 + +1.6
624,446 - -1.6
624,479 + +0.4
624,479 + +0.0
624,538 + +0.0
624,538 + +1.6
624,538 + +1.6
624,538 + +1.0
624,539 - +0.6
624,539 - -1.0
624,542 + +0.6
624,542 + +0.0
624,543 - +1.0
624,779 + Pf1N1B4_525 0.22 -1.0
624,780 - Pf1N1B4_525 0.22 +2.0
624,780 - Pf1N1B4_525 0.22 +0.0
624,894 - Pf1N1B4_525 0.34 +1.6
624,979 + Pf1N1B4_525 0.43 -1.0
624,980 - Pf1N1B4_525 0.43 +0.6
625,086 + Pf1N1B4_525 0.54 -1.6
625,087 - Pf1N1B4_525 0.54 -0.7
625,145 + Pf1N1B4_525 0.61 +0.0
625,145 + Pf1N1B4_525 0.61 +1.0
625,146 - Pf1N1B4_525 0.61 +1.4

Or see this region's nucleotide sequence