Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4748 and Pf1N1B4_4749 are separated by 246 nucleotides
Pf1N1B4_4748 - transporter, putative, at 5,243,344 to 5,244,531
_4748
Pf1N1B4_4749 - ABC transporter ATP-binding protein uup, at 5,244,778 to 5,246,343
_4749
Position (kb) 5244
5245
5246
5247 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5243.801 kb on + strand, within Pf1N1B4_4748 at 5243.801 kb on + strand, within Pf1N1B4_4748 at 5243.801 kb on + strand, within Pf1N1B4_4748 at 5243.802 kb on - strand, within Pf1N1B4_4748 at 5243.802 kb on - strand, within Pf1N1B4_4748 at 5243.802 kb on - strand, within Pf1N1B4_4748 at 5243.805 kb on - strand, within Pf1N1B4_4748 at 5243.814 kb on + strand, within Pf1N1B4_4748 at 5243.815 kb on - strand, within Pf1N1B4_4748 at 5243.815 kb on - strand, within Pf1N1B4_4748 at 5243.820 kb on + strand at 5243.821 kb on - strand, within Pf1N1B4_4748 at 5244.461 kb on + strand at 5244.461 kb on + strand at 5244.462 kb on - strand at 5244.462 kb on - strand at 5244.462 kb on - strand at 5244.462 kb on - strand at 5244.587 kb on + strand at 5244.780 kb on - strand at 5244.780 kb on - strand at 5244.780 kb on - strand at 5244.780 kb on - strand at 5244.807 kb on - strand at 5244.815 kb on + strand at 5244.815 kb on + strand at 5244.816 kb on - strand at 5245.209 kb on - strand, within Pf1N1B4_4749 at 5245.212 kb on - strand, within Pf1N1B4_4749 at 5245.649 kb on + strand, within Pf1N1B4_4749 at 5245.649 kb on + strand, within Pf1N1B4_4749 at 5245.649 kb on + strand, within Pf1N1B4_4749 at 5245.650 kb on - strand, within Pf1N1B4_4749 at 5245.658 kb on + strand, within Pf1N1B4_4749 at 5245.659 kb on - strand, within Pf1N1B4_4749 at 5246.060 kb on + strand, within Pf1N1B4_4749 at 5246.352 kb on + strand at 5246.370 kb on - strand at 5246.465 kb on + strand at 5246.561 kb on + strand at 5246.571 kb on + strand at 5246.571 kb on + strand at 5246.572 kb on - strand at 5246.696 kb on - strand at 5246.696 kb on - strand at 5246.702 kb on - strand at 5246.758 kb on + strand at 5246.876 kb on + strand at 5246.898 kb on - strand at 5246.952 kb on - strand at 5246.982 kb on - strand at 5247.072 kb on + strand at 5247.073 kb on - strand at 5247.073 kb on - strand at 5247.073 kb on - strand at 5247.085 kb on + strand at 5247.086 kb on - strand at 5247.086 kb on - strand at 5247.210 kb on + strand at 5247.211 kb on - strand at 5247.320 kb on - strand at 5247.320 kb on - strand at 5247.320 kb on - strand at 5247.320 kb on - strand at 5247.326 kb on + strand at 5247.327 kb on - strand at 5247.334 kb on - strand at 5247.334 kb on - strand at 5247.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 5,243,801 + Pf1N1B4_4748 0.38 -0.4 5,243,801 + Pf1N1B4_4748 0.38 +1.0 5,243,801 + Pf1N1B4_4748 0.38 -0.4 5,243,802 - Pf1N1B4_4748 0.39 -0.7 5,243,802 - Pf1N1B4_4748 0.39 +0.2 5,243,802 - Pf1N1B4_4748 0.39 +0.6 5,243,805 - Pf1N1B4_4748 0.39 +0.2 5,243,814 + Pf1N1B4_4748 0.40 -1.4 5,243,815 - Pf1N1B4_4748 0.40 -1.4 5,243,815 - Pf1N1B4_4748 0.40 -0.4 5,243,820 + +1.2 5,243,821 - Pf1N1B4_4748 0.40 -0.4 5,244,461 + +0.1 5,244,461 + -1.4 5,244,462 - +0.6 5,244,462 - -0.0 5,244,462 - -0.4 5,244,462 - -1.4 5,244,587 + +1.2 5,244,780 - +0.4 5,244,780 - +1.2 5,244,780 - -0.4 5,244,780 - +0.6 5,244,807 - -0.1 5,244,815 + -0.4 5,244,815 + -0.4 5,244,816 - +1.2 5,245,209 - Pf1N1B4_4749 0.28 +2.0 5,245,212 - Pf1N1B4_4749 0.28 -0.2 5,245,649 + Pf1N1B4_4749 0.56 -1.4 5,245,649 + Pf1N1B4_4749 0.56 +0.2 5,245,649 + Pf1N1B4_4749 0.56 +1.6 5,245,650 - Pf1N1B4_4749 0.56 +1.1 5,245,658 + Pf1N1B4_4749 0.56 +0.6 5,245,659 - Pf1N1B4_4749 0.56 -1.9 5,246,060 + Pf1N1B4_4749 0.82 -0.4 5,246,352 + +1.2 5,246,370 - +2.2 5,246,465 + -0.4 5,246,561 + +0.6 5,246,571 + +0.6 5,246,571 + -0.4 5,246,572 - +1.2 5,246,696 - +2.4 5,246,696 - -0.9 5,246,702 - -0.9 5,246,758 + +1.4 5,246,876 + +1.0 5,246,898 - -0.9 5,246,952 - +2.0 5,246,982 - +0.4 5,247,072 + +0.6 5,247,073 - -1.4 5,247,073 - +1.0 5,247,073 - -1.4 5,247,085 + -0.5 5,247,086 - -0.9 5,247,086 - +0.6 5,247,210 + +1.0 5,247,211 - -1.1 5,247,320 - -1.9 5,247,320 - -0.8 5,247,320 - +0.4 5,247,320 - +0.6 5,247,326 + +1.0 5,247,327 - +0.4 5,247,334 - +2.8 5,247,334 - -0.9 5,247,334 - +0.6
Or see this region's nucleotide sequence