Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4720 and Pf1N1B4_4721 are separated by 18 nucleotides Pf1N1B4_4721 and Pf1N1B4_4722 are separated by 116 nucleotides Pf1N1B4_4722 and Pf1N1B4_4723 are separated by 194 nucleotides
Pf1N1B4_4720 - AFG1-like ATPase, at 5,216,261 to 5,217,379
_4720
Pf1N1B4_4721 - Nuclease inhibitor, at 5,217,398 to 5,217,979
_4721
Pf1N1B4_4722 - Histone acetyltransferase HPA2 and related acetyltransferases, at 5,218,096 to 5,218,587
_4722
Pf1N1B4_4723 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 5,218,782 to 5,220,527
_4723
Position (kb) 5217
5218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5216.409 kb on - strand, within Pf1N1B4_4720 at 5216.409 kb on - strand, within Pf1N1B4_4720 at 5216.409 kb on - strand at 5216.725 kb on - strand, within Pf1N1B4_4720 at 5217.261 kb on - strand, within Pf1N1B4_4720 at 5217.294 kb on - strand at 5217.306 kb on - strand at 5217.576 kb on - strand at 5217.576 kb on - strand, within Pf1N1B4_4721 at 5217.576 kb on - strand, within Pf1N1B4_4721 at 5217.703 kb on + strand, within Pf1N1B4_4721 at 5218.132 kb on + strand at 5218.169 kb on + strand at 5218.224 kb on + strand, within Pf1N1B4_4722 at 5218.489 kb on - strand, within Pf1N1B4_4722 at 5218.698 kb on + strand at 5218.751 kb on + strand at 5218.751 kb on + strand at 5218.783 kb on + strand at 5218.809 kb on - strand at 5218.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 5,216,409 - Pf1N1B4_4720 0.13 +0.6 5,216,409 - Pf1N1B4_4720 0.13 -0.4 5,216,409 - +0.6 5,216,725 - Pf1N1B4_4720 0.41 -1.4 5,217,261 - Pf1N1B4_4720 0.89 +1.2 5,217,294 - +0.2 5,217,306 - -2.4 5,217,576 - +0.6 5,217,576 - Pf1N1B4_4721 0.31 +1.2 5,217,576 - Pf1N1B4_4721 0.31 +0.6 5,217,703 + Pf1N1B4_4721 0.52 +0.6 5,218,132 + -0.4 5,218,169 + +0.6 5,218,224 + Pf1N1B4_4722 0.26 -0.9 5,218,489 - Pf1N1B4_4722 0.80 -0.4 5,218,698 + +2.0 5,218,751 + -1.4 5,218,751 + +0.8 5,218,783 + -0.0 5,218,809 - +2.2 5,218,868 - +0.3
Or see this region's nucleotide sequence