Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3936

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3935 and Pf1N1B4_3936 are separated by 3 nucleotidesPf1N1B4_3936 and Pf1N1B4_3937 are separated by 181 nucleotidesPf1N1B4_3937 and Pf1N1B4_3938 are separated by 28 nucleotides Pf1N1B4_3935 - Major facilitator family transporter, at 4,372,211 to 4,373,365 _3935 Pf1N1B4_3936 - Transcriptional regulator, LysR family, at 4,373,369 to 4,374,268 _3936 Pf1N1B4_3937 - Membrane protein involved in colicin uptake, at 4,374,450 to 4,374,692 _3937 Pf1N1B4_3938 - Integral membrane protein TerC, at 4,374,721 to 4,375,470 _3938 Position (kb) 4373 4374 4375Strain fitness (log2 ratio) -2 -1 0 1 2at 4372.391 kb on + strand, within Pf1N1B4_3935at 4372.581 kb on - strand, within Pf1N1B4_3935at 4372.735 kb on + strandat 4372.735 kb on + strandat 4372.736 kb on - strand, within Pf1N1B4_3935at 4372.740 kb on - strandat 4372.874 kb on + strand, within Pf1N1B4_3935at 4372.874 kb on + strand, within Pf1N1B4_3935at 4372.874 kb on + strand, within Pf1N1B4_3935at 4372.875 kb on - strand, within Pf1N1B4_3935at 4373.101 kb on + strand, within Pf1N1B4_3935at 4373.457 kb on + strandat 4374.032 kb on + strand, within Pf1N1B4_3936at 4374.033 kb on - strand, within Pf1N1B4_3936at 4374.033 kb on - strand, within Pf1N1B4_3936at 4374.138 kb on + strand, within Pf1N1B4_3936at 4374.139 kb on - strand, within Pf1N1B4_3936at 4374.139 kb on - strand, within Pf1N1B4_3936at 4374.243 kb on + strandat 4374.244 kb on - strandat 4374.244 kb on - strandat 4374.314 kb on + strandat 4374.387 kb on + strandat 4374.388 kb on - strandat 4374.388 kb on - strandat 4374.458 kb on + strandat 4374.458 kb on + strandat 4374.458 kb on + strandat 4374.459 kb on - strandat 4374.459 kb on - strandat 4374.459 kb on - strandat 4374.690 kb on + strandat 4374.690 kb on + strandat 4374.699 kb on + strandat 4374.727 kb on + strandat 4374.734 kb on + strandat 4374.734 kb on + strandat 4374.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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4,372,391 + Pf1N1B4_3935 0.16 +2.4
4,372,581 - Pf1N1B4_3935 0.32 -0.2
4,372,735 + +1.4
4,372,735 + +0.8
4,372,736 - Pf1N1B4_3935 0.45 +2.4
4,372,740 - +2.1
4,372,874 + Pf1N1B4_3935 0.57 +0.8
4,372,874 + Pf1N1B4_3935 0.57 -0.5
4,372,874 + Pf1N1B4_3935 0.57 -0.2
4,372,875 - Pf1N1B4_3935 0.57 -0.2
4,373,101 + Pf1N1B4_3935 0.77 -1.0
4,373,457 + +1.4
4,374,032 + Pf1N1B4_3936 0.74 +0.1
4,374,033 - Pf1N1B4_3936 0.74 -0.2
4,374,033 - Pf1N1B4_3936 0.74 +1.1
4,374,138 + Pf1N1B4_3936 0.85 +1.6
4,374,139 - Pf1N1B4_3936 0.86 -1.2
4,374,139 - Pf1N1B4_3936 0.86 +0.8
4,374,243 + -1.2
4,374,244 - -0.2
4,374,244 - +1.8
4,374,314 + -0.8
4,374,387 + +0.9
4,374,388 - +0.0
4,374,388 - +0.8
4,374,458 + +2.4
4,374,458 + -0.8
4,374,458 + +0.4
4,374,459 - -1.2
4,374,459 - +1.4
4,374,459 - -1.8
4,374,690 + -0.6
4,374,690 + +1.4
4,374,699 + +0.4
4,374,727 + -2.2
4,374,734 + +0.0
4,374,734 + +0.0
4,374,734 + -1.2

Or see this region's nucleotide sequence