Strain Fitness in Pantoea sp. MT58 around IAI47_17870

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,793,840	+		IAI47_17865	0.14	+0.8
3,793,840	+		IAI47_17865	0.14	+0.2
3,793,841	-		IAI47_17865	0.15	-1.6
3,793,863	+		IAI47_17865	0.17	+0.3
3,793,863	+		IAI47_17865	0.17	-0.6
3,793,863	+		IAI47_17865	0.17	-0.1
3,793,864	-		IAI47_17865	0.17	-1.3
3,793,864	-		IAI47_17865	0.17	+1.6
3,793,893	+		IAI47_17865	0.20	-0.7
3,793,893	+		IAI47_17865	0.20	+0.4
3,793,894	-		IAI47_17865	0.20	-0.6
3,793,894	-		IAI47_17865	0.20	-1.0
3,793,894	-		IAI47_17865	0.20	+0.8
3,793,894	-		IAI47_17865	0.20	-0.3
3,793,899	+		IAI47_17865	0.20	+0.1
3,793,899	+		IAI47_17865	0.20	+0.0
3,793,899	+		IAI47_17865	0.20	+2.0
3,793,899	+		IAI47_17865	0.20	-0.4
3,793,899	+		IAI47_17865	0.20	-0.9
3,793,899	+		IAI47_17865	0.20	+1.0
3,793,900	-		IAI47_17865	0.20	-0.3
3,793,900	-		IAI47_17865	0.20	-0.7
3,793,900	-		IAI47_17865	0.20	+0.6
3,793,992	+		IAI47_17865	0.30	+1.4
3,793,992	+		IAI47_17865	0.30	+0.1
3,793,992	+		IAI47_17865	0.30	-0.7
3,793,993	-		IAI47_17865	0.30	+1.0
3,793,993	-		IAI47_17865	0.30	+0.2
3,794,112	+		IAI47_17865	0.42	-0.2
3,794,112	+		IAI47_17865	0.42	-1.2
3,794,113	-		IAI47_17865	0.42	-1.1
3,794,113	-		IAI47_17865	0.42	-1.0
3,794,197	+		IAI47_17865	0.50	-0.9
3,794,197	+		IAI47_17865	0.50	+3.6
3,794,198	-		IAI47_17865	0.50	-2.7
3,794,198	-		IAI47_17865	0.50	-0.5
3,794,198	-		IAI47_17865	0.50	+1.0
3,794,198	-		IAI47_17865	0.50	-0.9
3,794,198	-		IAI47_17865	0.50	-3.3
3,794,256	+		IAI47_17865	0.56	+2.3
3,794,256	+		IAI47_17865	0.56	-1.7
3,794,256	+		IAI47_17865	0.56	+0.1
3,794,256	+		IAI47_17865	0.56	-2.3
3,794,256	+		IAI47_17865	0.56	+1.2
3,794,256	+		IAI47_17865	0.56	+0.6
3,794,256	+		IAI47_17865	0.56	+0.9
3,794,256	+		IAI47_17865	0.56	-1.8
3,794,256	+		IAI47_17865	0.56	-1.2
3,794,256	+		IAI47_17865	0.56	+0.9
3,794,256	+		IAI47_17865	0.56	-0.4
3,794,256	+		IAI47_17865	0.56	-0.5
3,794,256	+		IAI47_17865	0.56	-1.6
3,794,257	-		IAI47_17865	0.56	+1.6
3,794,257	-		IAI47_17865	0.56	-1.7
3,794,257	-		IAI47_17865	0.56	+2.1
3,794,257	-		IAI47_17865	0.56	-0.7
3,794,257	-		IAI47_17865	0.56	+0.6
3,794,257	-		IAI47_17865	0.56	+2.4
3,794,260	+		IAI47_17865	0.57	+0.7
3,794,260	+		IAI47_17865	0.57	+2.2
3,794,261	-		IAI47_17865	0.57	-3.1
3,794,261	-		IAI47_17865	0.57	-0.5
3,794,261	-		IAI47_17865	0.57	+2.2
3,794,261	-		IAI47_17865	0.57	+0.7
3,794,329	+		IAI47_17865	0.64	-0.4
3,794,329	+		IAI47_17865	0.64	+2.9
3,794,391	-		IAI47_17865	0.70	-0.1
3,794,391	-		IAI47_17865	0.70	+0.6
3,794,391	-		IAI47_17865	0.70	+1.0
3,794,418	-		IAI47_17865	0.73	+0.6
3,794,433	+		IAI47_17865	0.74	-1.6
3,794,433	+		IAI47_17865	0.74	-0.5
3,794,434	-		IAI47_17865	0.74	-0.1
3,794,434	-		IAI47_17865	0.74	-0.6
3,794,434	-		IAI47_17865	0.74	-2.1
3,794,526	+		IAI47_17865	0.83	-0.7
3,794,526	+		IAI47_17865	0.83	+0.0
3,794,526	+		IAI47_17865	0.83	-0.3
3,794,527	-		IAI47_17865	0.84	+0.3
3,794,527	-		IAI47_17865	0.84	-0.4
3,794,527	-		IAI47_17865	0.84	+0.7
3,794,527	-		IAI47_17865	0.84	-0.3
3,794,535	+		IAI47_17865	0.84	+0.1
3,794,536	-		IAI47_17865	0.84	-0.7
3,794,536	-		IAI47_17865	0.84	-0.3
3,794,536	-		IAI47_17865	0.84	-1.4
3,794,583	+		IAI47_17865	0.89	-0.8
3,794,583	+		IAI47_17865	0.89	+0.5
3,794,584	-		IAI47_17865	0.89	-0.5
3,794,594	-				+0.4
3,794,620	-				+0.4
3,794,620	-				-0.1
3,794,650	+				+0.1
3,794,650	+				+1.1
3,794,650	+				+0.5
3,794,651	-				+0.6
3,794,651	-				+0.2
3,794,651	-				-0.2
3,794,651	-				-2.0
3,794,659	+				-2.0
3,794,659	+				-1.7
3,794,659	+				+0.6
3,794,660	-				+0.2
3,794,660	-				-2.2
3,794,660	-				-1.5
3,794,660	-				+0.6
3,794,660	-				+0.3
3,794,683	+				-1.4
3,794,684	-				+0.3
3,794,712	+				-1.9
3,794,712	+				+0.9
3,794,712	+				-1.3
3,794,712	+				+0.3
3,794,712	+				-0.6
3,794,712	+				-0.6
3,794,712	+				+0.6
3,794,713	-				-0.3
3,794,713	-				+0.2
3,794,713	-				+1.7
3,794,713	-				-0.1
3,794,788	-				-2.3
3,794,796	+				+0.3
3,794,803	+				-1.2
3,794,804	-				+0.7
3,794,804	-				-0.2
3,794,804	-				-1.1
3,794,839	+				+0.1
3,794,839	+				-0.6
3,794,839	+				-1.7
3,794,839	+				-0.1
3,794,839	+				+0.5
3,794,839	+				+0.8
3,794,839	+				+0.8
3,794,840	-				-0.4
3,794,840	-				-1.5
3,794,840	-				-1.7
3,794,840	-				-0.4
3,794,881	+				-0.9
3,794,975	+		IAI47_17870	0.14	-2.7
3,794,983	-		IAI47_17870	0.15	+0.6
3,795,003	+		IAI47_17870	0.17	-2.1
3,795,003	+		IAI47_17870	0.17	+2.4
3,795,013	+		IAI47_17870	0.17	-0.6
3,795,014	-		IAI47_17870	0.18	-1.1
3,795,067	+		IAI47_17870	0.22	+0.0
3,795,067	+		IAI47_17870	0.22	-0.5
3,795,080	-		IAI47_17870	0.23	-1.6
3,795,080	-		IAI47_17870	0.23	+0.5
3,795,120	+		IAI47_17870	0.26	-3.8
3,795,120	+		IAI47_17870	0.26	+0.8
3,795,120	+		IAI47_17870	0.26	-1.0
3,795,120	+		IAI47_17870	0.26	+0.8
3,795,120	+		IAI47_17870	0.26	+1.0
3,795,121	-		IAI47_17870	0.26	-3.4
3,795,121	-		IAI47_17870	0.26	-2.7
3,795,238	+		IAI47_17870	0.35	-2.5
3,795,261	+		IAI47_17870	0.37	+0.6
3,795,262	-		IAI47_17870	0.37	+1.7
3,795,262	-		IAI47_17870	0.37	+0.9
3,795,262	-		IAI47_17870	0.37	+2.1
3,795,262	-		IAI47_17870	0.37	-1.2
3,795,265	+		IAI47_17870	0.38	-0.5
3,795,265	+		IAI47_17870	0.38	+1.1
3,795,265	+		IAI47_17870	0.38	+0.0
3,795,265	+		IAI47_17870	0.38	-0.1
3,795,265	+		IAI47_17870	0.38	-0.5
3,795,265	+		IAI47_17870	0.38	-2.2
3,795,265	+		IAI47_17870	0.38	-1.7
3,795,266	-		IAI47_17870	0.38	+0.4
3,795,266	-		IAI47_17870	0.38	+0.5
3,795,266	-		IAI47_17870	0.38	-1.4
3,795,266	-		IAI47_17870	0.38	-0.5
3,795,266	-		IAI47_17870	0.38	+0.9
3,795,266	-		IAI47_17870	0.38	+0.4
3,795,266	-		IAI47_17870	0.38	-0.5
3,795,266	-		IAI47_17870	0.38	-0.4
3,795,266	-		IAI47_17870	0.38	-0.5
3,795,266	-		IAI47_17870	0.38	+0.5
3,795,266	-		IAI47_17870	0.38	+0.3
3,795,268	+		IAI47_17870	0.38	+0.9
3,795,268	+		IAI47_17870	0.38	-1.1
3,795,268	+		IAI47_17870	0.38	+1.1
3,795,268	+		IAI47_17870	0.38	+1.0
3,795,268	+		IAI47_17870	0.38	-0.9
3,795,268	+		IAI47_17870	0.38	-0.1
3,795,268	+		IAI47_17870	0.38	-1.1
3,795,268	+		IAI47_17870	0.38	+0.3
3,795,268	+		IAI47_17870	0.38	+0.4
3,795,268	+		IAI47_17870	0.38	-0.4
3,795,269	-		IAI47_17870	0.38	-0.1
3,795,269	-		IAI47_17870	0.38	-0.4
3,795,269	-		IAI47_17870	0.38	+1.2
3,795,269	-		IAI47_17870	0.38	-0.5
3,795,269	-		IAI47_17870	0.38	-1.0
3,795,269	-		IAI47_17870	0.38	-1.0
3,795,269	-		IAI47_17870	0.38	-1.7
3,795,269	-		IAI47_17870	0.38	+0.7
3,795,269	-		IAI47_17870	0.38	-0.1
3,795,269	-		IAI47_17870	0.38	+0.0
3,795,269	-		IAI47_17870	0.38	-1.0
3,795,291	+		IAI47_17870	0.40	-1.0
3,795,291	+		IAI47_17870	0.40	+0.7
3,795,291	+		IAI47_17870	0.40	-0.8
3,795,292	-		IAI47_17870	0.40	-0.1
3,795,292	-		IAI47_17870	0.40	-0.1
3,795,292	-		IAI47_17870	0.40	-0.5
3,795,292	-		IAI47_17870	0.40	-0.6
3,795,297	+		IAI47_17870	0.40	-0.2
3,795,297	+		IAI47_17870	0.40	-0.2
3,795,297	+		IAI47_17870	0.40	+1.8
3,795,297	+		IAI47_17870	0.40	-0.3
3,795,298	-		IAI47_17870	0.40	+1.0
3,795,298	-		IAI47_17870	0.40	-1.2
3,795,298	-		IAI47_17870	0.40	-2.7
3,795,298	-		IAI47_17870	0.40	+0.2
3,795,298	-		IAI47_17870	0.40	-0.7
3,795,310	+		IAI47_17870	0.41	+0.2
3,795,310	+		IAI47_17870	0.41	+1.9
3,795,311	-		IAI47_17870	0.41	-1.7
3,795,311	-		IAI47_17870	0.41	-0.1
3,795,312	+		IAI47_17870	0.41	-0.4
3,795,312	+		IAI47_17870	0.41	+0.9
3,795,312	+		IAI47_17870	0.41	-2.5
3,795,312	+		IAI47_17870	0.41	-0.6
3,795,313	-		IAI47_17870	0.41	-0.8
3,795,313	-		IAI47_17870	0.41	-1.4
3,795,313	-		IAI47_17870	0.41	-3.4
3,795,313	-		IAI47_17870	0.41	-3.1
3,795,313	-		IAI47_17870	0.41	-0.4
3,795,313	-		IAI47_17870	0.41	-2.9
3,795,313	-		IAI47_17870	0.41	+0.1
3,795,313	-		IAI47_17870	0.41	-2.9
3,795,313	-		IAI47_17870	0.41	+0.8
3,795,313	-		IAI47_17870	0.41	+0.3
3,795,316	+		IAI47_17870	0.42	+0.0
3,795,316	+		IAI47_17870	0.42	+1.6
3,795,316	+		IAI47_17870	0.42	-0.3
3,795,316	+		IAI47_17870	0.42	+0.6
3,795,316	+		IAI47_17870	0.42	+0.9
3,795,316	+		IAI47_17870	0.42	+1.9
3,795,316	+		IAI47_17870	0.42	+1.3
3,795,316	+		IAI47_17870	0.42	-0.1
3,795,316	+		IAI47_17870	0.42	+1.2
3,795,316	+		IAI47_17870	0.42	+1.5
3,795,316	+		IAI47_17870	0.42	+1.4
3,795,316	+		IAI47_17870	0.42	+0.0
3,795,316	+		IAI47_17870	0.42	-3.0
3,795,316	+		IAI47_17870	0.42	-0.2
3,795,317	-		IAI47_17870	0.42	+0.5
3,795,317	-		IAI47_17870	0.42	+0.5
3,795,317	-		IAI47_17870	0.42	-2.9
3,795,317	-		IAI47_17870	0.42	-2.5
3,795,317	-		IAI47_17870	0.42	-1.6
3,795,317	-		IAI47_17870	0.42	-1.5
3,795,317	-		IAI47_17870	0.42	+0.1
3,795,317	-		IAI47_17870	0.42	-3.4
3,795,317	-		IAI47_17870	0.42	-0.4
3,795,317	-		IAI47_17870	0.42	+1.0
3,795,317	-		IAI47_17870	0.42	-2.9
3,795,317	-		IAI47_17870	0.42	-0.5
3,795,317	-		IAI47_17870	0.42	-0.6
3,795,318	+		IAI47_17870	0.42	-0.4
3,795,318	+		IAI47_17870	0.42	+0.5
3,795,318	+		IAI47_17870	0.42	+0.3
3,795,318	+		IAI47_17870	0.42	+0.3
3,795,318	+		IAI47_17870	0.42	+0.1
3,795,319	-		IAI47_17870	0.42	+0.2
3,795,319	-		IAI47_17870	0.42	-3.2
3,795,319	-		IAI47_17870	0.42	+0.0
3,795,319	-		IAI47_17870	0.42	-0.2
3,795,319	-		IAI47_17870	0.42	-0.6
3,795,319	-		IAI47_17870	0.42	-1.1
3,795,359	+		IAI47_17870	0.45	-1.4
3,795,359	+		IAI47_17870	0.45	-2.0
3,795,359	+		IAI47_17870	0.45	-0.3
3,795,359	+		IAI47_17870	0.45	+0.9
3,795,359	+		IAI47_17870	0.45	-2.2
3,795,359	+		IAI47_17870	0.45	-2.9
3,795,359	+		IAI47_17870	0.45	-1.2
3,795,360	-		IAI47_17870	0.45	+1.4
3,795,360	-		IAI47_17870	0.45	+4.6
3,795,360	-		IAI47_17870	0.45	-1.4
3,795,405	+		IAI47_17870	0.49	+2.4
3,795,406	-		IAI47_17870	0.49	+4.2
3,795,406	-		IAI47_17870	0.49	+0.9
3,795,504	+		IAI47_17870	0.57	-2.5
3,795,504	+		IAI47_17870	0.57	+0.6
3,795,504	+		IAI47_17870	0.57	-1.0
3,795,504	+		IAI47_17870	0.57	-1.1
3,795,512	-		IAI47_17870	0.57	+1.6
3,795,521	+		IAI47_17870	0.58	-0.6
3,795,521	+		IAI47_17870	0.58	-0.1
3,795,522	-		IAI47_17870	0.58	-3.8
3,795,522	-		IAI47_17870	0.58	-1.6
3,795,522	-		IAI47_17870	0.58	-1.1
3,795,522	-		IAI47_17870	0.58	-0.7
3,795,552	+		IAI47_17870	0.61	-0.2
3,795,565	+		IAI47_17870	0.62	+0.6
3,795,566	-		IAI47_17870	0.62	-3.2
3,795,566	-		IAI47_17870	0.62	-0.6
3,795,721	+		IAI47_17870	0.74	+2.0
3,795,727	+		IAI47_17870	0.75	+2.0
3,795,727	+		IAI47_17870	0.75	-2.7
3,795,727	+		IAI47_17870	0.75	-1.2
3,795,727	+		IAI47_17870	0.75	+0.4
3,795,727	+		IAI47_17870	0.75	+1.8
3,795,766	+		IAI47_17870	0.78	-2.8
3,795,766	+		IAI47_17870	0.78	-0.5
3,795,766	+		IAI47_17870	0.78	-1.9
3,795,767	-		IAI47_17870	0.78	-1.2
3,795,767	-		IAI47_17870	0.78	-1.8
3,795,778	+		IAI47_17870	0.79	-0.4
3,795,778	+		IAI47_17870	0.79	+0.4
3,795,778	+		IAI47_17870	0.79	-2.6
3,795,779	-		IAI47_17870	0.79	+0.9
3,795,790	+		IAI47_17870	0.80	+1.8
3,795,790	+		IAI47_17870	0.80	+2.6
3,795,791	-		IAI47_17870	0.80	-0.2
3,795,802	+		IAI47_17870	0.80	+1.2
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