Strain Fitness in Pantoea sp. MT58 around IAI47_09020

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,902,399	-		IAI47_09010	0.56	-1.8
1,902,431	+		IAI47_09010	0.60	+0.2
1,902,459	+		IAI47_09010	0.63	-0.9
1,902,504	+		IAI47_09010	0.69	+0.2
1,902,666	-		IAI47_09010	0.88	+0.7
1,902,689	+				-4.2
1,902,690	-				-0.7
1,902,690	-				-0.2
1,902,690	-				+0.2
1,902,690	-				+3.2
1,902,738	+				-0.6
1,902,796	+				+0.3
1,902,797	-				+0.2
1,902,797	-				-0.8
1,902,827	+				-1.2
1,902,900	+		IAI47_09015	0.16	+1.7
1,902,901	-		IAI47_09015	0.16	-0.2
1,902,911	+		IAI47_09015	0.19	-1.1
1,902,911	+		IAI47_09015	0.19	+1.5
1,902,911	+		IAI47_09015	0.19	+0.2
1,902,911	+		IAI47_09015	0.19	+0.5
1,902,911	+		IAI47_09015	0.19	-0.7
1,902,911	+		IAI47_09015	0.19	+1.4
1,902,911	+		IAI47_09015	0.19	+1.2
1,902,911	+		IAI47_09015	0.19	-1.8
1,902,911	+		IAI47_09015	0.19	+2.4
1,902,912	-		IAI47_09015	0.19	+0.7
1,902,912	-		IAI47_09015	0.19	+3.2
1,902,912	-		IAI47_09015	0.19	+1.4
1,902,912	-		IAI47_09015	0.19	+1.7
1,902,912	-		IAI47_09015	0.19	-0.6
1,902,912	-		IAI47_09015	0.19	-0.5
1,902,912	-		IAI47_09015	0.19	-0.2
1,902,912	-		IAI47_09015	0.19	+2.6
1,902,912	-		IAI47_09015	0.19	-2.6
1,902,912	-		IAI47_09015	0.19	+0.0
1,902,912	-		IAI47_09015	0.19	+1.2
1,902,914	+		IAI47_09015	0.19	+0.3
1,902,915	-		IAI47_09015	0.20	+1.2
1,903,032	+		IAI47_09015	0.45	+0.5
1,903,032	+		IAI47_09015	0.45	-1.2
1,903,033	-		IAI47_09015	0.45	+1.4
1,903,033	-		IAI47_09015	0.45	+2.0
1,903,033	-		IAI47_09015	0.45	+2.0
1,903,033	-		IAI47_09015	0.45	-0.0
1,903,042	+		IAI47_09015	0.47	-0.6
1,903,043	-		IAI47_09015	0.48	-2.0
1,903,113	+		IAI47_09015	0.63	-3.0
1,903,114	-		IAI47_09015	0.63	-0.8
1,903,114	-		IAI47_09015	0.63	+2.2
1,903,139	+		IAI47_09015	0.69	-2.1
1,903,139	+		IAI47_09015	0.69	-1.2
1,903,149	+		IAI47_09015	0.71	+0.0
1,903,160	+		IAI47_09015	0.73	+1.0
1,903,160	+		IAI47_09015	0.73	+1.4
1,903,237	+				-0.3
1,903,237	+				+0.9
1,903,237	+				+0.4
1,903,237	+				-0.8
1,903,237	+				+0.9
1,903,237	+				+1.2
1,903,237	+				-0.7
1,903,237	+				+0.8
1,903,237	+				-1.0
1,903,237	+				-0.4
1,903,237	+				+1.3
1,903,237	+				+0.6
1,903,237	+				+1.4
1,903,237	+				+1.1
1,903,237	+				-0.6
1,903,238	-				-0.4
1,903,238	-				-1.9
1,903,238	-				-1.5
1,903,238	-				-1.6
1,903,238	-				+2.6
1,903,238	-				+0.6
1,903,238	-				-1.0
1,903,238	-				+1.3
1,903,238	-				+1.0
1,903,238	-				+1.2
1,903,238	-				+0.3
1,903,238	-				-1.2
1,903,238	-				+1.2
1,903,242	+				-0.9
1,903,242	+				+0.4
1,903,242	+				+0.5
1,903,242	+				-3.4
1,903,243	-				-0.2
1,903,243	-				+0.2
1,903,244	+				-0.3
1,903,244	+				+0.3
1,903,244	+				+1.8
1,903,244	+				-2.4
1,903,245	-				+3.3
1,903,245	-				-0.8
1,903,257	+				-0.4
1,903,258	-				+1.9
1,903,284	+				+0.7
1,903,284	+				-0.5
1,903,285	-				+0.6
1,903,285	-				-1.3
1,903,285	-				-0.8
1,903,285	-				-1.2
1,903,299	-				+0.6
1,903,322	+				-0.1
1,903,322	+				+0.7
1,903,323	-				-1.5
1,903,323	-				+1.2
1,903,323	-				+0.8
1,903,327	+				+0.1
1,903,327	+				+0.7
1,903,328	-				+0.2
1,903,350	+				-0.7
1,903,350	+				-1.3
1,903,351	-				-2.6
1,903,351	-				+1.4
1,903,351	-				-0.8
1,903,354	+				+1.2
1,903,354	+				-0.2
1,903,355	-				-2.6
1,903,355	-				+1.3
1,903,373	+				-0.4
1,903,525	+		IAI47_09020	0.16	+1.0
1,903,525	+		IAI47_09020	0.16	+0.8
1,903,526	-		IAI47_09020	0.16	+0.2
1,903,533	+		IAI47_09020	0.17	+0.6
1,903,587	+		IAI47_09020	0.23	-0.1
1,903,588	-		IAI47_09020	0.23	-0.8
1,903,628	+		IAI47_09020	0.28	-0.2
1,903,629	-		IAI47_09020	0.28	-0.8
1,903,629	-		IAI47_09020	0.28	+1.2
1,903,695	+		IAI47_09020	0.35	-1.0
1,903,695	+		IAI47_09020	0.35	-0.4
1,903,695	+		IAI47_09020	0.35	+1.5
1,903,763	+		IAI47_09020	0.42	+0.3
1,903,763	+		IAI47_09020	0.42	-0.4
1,903,763	+		IAI47_09020	0.42	+0.0
1,903,764	-		IAI47_09020	0.43	-1.0
1,903,788	+		IAI47_09020	0.45	-0.3
1,903,788	+		IAI47_09020	0.45	-2.0
1,903,788	+		IAI47_09020	0.45	+1.0
1,903,789	-		IAI47_09020	0.45	-0.4
1,903,791	+		IAI47_09020	0.46	+1.2
1,903,791	+		IAI47_09020	0.46	+0.5
1,903,791	+		IAI47_09020	0.46	+0.2
1,903,791	+		IAI47_09020	0.46	+1.8
1,903,791	+		IAI47_09020	0.46	+0.1
1,903,791	+		IAI47_09020	0.46	-1.0
1,903,791	+		IAI47_09020	0.46	+0.4
1,903,791	+		IAI47_09020	0.46	+0.9
1,903,792	-		IAI47_09020	0.46	+0.0
1,903,792	-		IAI47_09020	0.46	-1.2
1,903,802	+		IAI47_09020	0.47	-0.4
1,903,802	+		IAI47_09020	0.47	-0.5
1,903,802	+		IAI47_09020	0.47	+0.9
1,903,802	+		IAI47_09020	0.47	+0.6
1,903,802	+		IAI47_09020	0.47	-0.2
1,903,805	+		IAI47_09020	0.47	+1.3
1,903,805	+		IAI47_09020	0.47	-0.5
1,903,805	+		IAI47_09020	0.47	+1.0
1,903,806	-		IAI47_09020	0.47	-1.8
1,903,819	+		IAI47_09020	0.49	+0.9
1,903,819	+		IAI47_09020	0.49	+0.3
1,903,820	-		IAI47_09020	0.49	-1.2
1,903,838	+		IAI47_09020	0.51	-1.3
1,903,838	+		IAI47_09020	0.51	+0.4
1,903,838	+		IAI47_09020	0.51	+0.9
1,903,838	+		IAI47_09020	0.51	-0.6
1,903,838	+		IAI47_09020	0.51	-1.3
1,903,902	+		IAI47_09020	0.58	-0.7
1,903,916	+		IAI47_09020	0.59	+1.5
1,903,916	+		IAI47_09020	0.59	-0.2
1,903,917	-		IAI47_09020	0.59	-2.3
1,903,934	+		IAI47_09020	0.61	-0.5
1,903,934	+		IAI47_09020	0.61	-0.2
1,903,934	+		IAI47_09020	0.61	-1.0
1,903,934	+		IAI47_09020	0.61	-1.5
1,903,934	+		IAI47_09020	0.61	+1.2
1,904,082	+		IAI47_09020	0.78	-0.6
1,904,082	+		IAI47_09020	0.78	+1.6
1,904,082	+		IAI47_09020	0.78	+0.2
1,904,082	+		IAI47_09020	0.78	+0.8
1,904,082	+		IAI47_09020	0.78	+0.4
1,904,082	+		IAI47_09020	0.78	+2.2
1,904,083	-		IAI47_09020	0.78	+0.2
1,904,130	+		IAI47_09020	0.83	+0.2
1,904,130	+		IAI47_09020	0.83	+0.5
1,904,157	-		IAI47_09020	0.86	-0.2
1,904,157	-		IAI47_09020	0.86	-1.6
1,904,159	+		IAI47_09020	0.86	+0.5
1,904,159	+		IAI47_09020	0.86	+1.7
1,904,237	+				+1.3
1,904,258	+				+1.4
1,904,258	+				-2.2
1,904,258	+				+0.7
1,904,258	+				+4.2
1,904,258	+				-0.3
1,904,258	+				+3.2
1,904,258	+				+0.9
1,904,258	+				-0.2
1,904,258	+				+1.2
1,904,258	+				+3.4
1,904,258	+				+0.7
1,904,258	+				+0.9
1,904,259	-				+1.6
1,904,261	+				-1.0
1,904,261	+				-1.3
1,904,281	+				+0.2
1,904,281	+				+1.8
1,904,352	+				-1.8
1,904,352	+				-0.7
1,904,360	+				-0.9
1,904,360	+				-0.9
1,904,360	+				-0.6