Strain Fitness in Pantoea sp. MT58 around IAI47_07255

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,533,132	+				+0.3
1,533,132	+				+0.7
1,533,132	+				+0.1
1,533,132	+				-1.3
1,533,133	-				-2.8
1,533,133	-				+1.6
1,533,134	+				+0.4
1,533,134	+				+0.3
1,533,135	-				-0.3
1,533,139	+				+0.5
1,533,139	+				-0.9
1,533,139	+				+2.9
1,533,142	+				-0.4
1,533,193	+		IAI47_07245	0.23	-1.7
1,533,193	+		IAI47_07245	0.23	+0.9
1,533,193	+		IAI47_07245	0.23	+1.1
1,533,194	-		IAI47_07245	0.24	+0.1
1,533,194	-		IAI47_07245	0.24	+1.9
1,533,204	+		IAI47_07245	0.27	+0.1
1,533,205	-		IAI47_07245	0.27	-0.3
1,533,236	-		IAI47_07245	0.37	-1.6
1,533,236	-		IAI47_07245	0.37	+2.6
1,533,245	+		IAI47_07245	0.40	+0.1
1,533,245	+		IAI47_07245	0.40	+0.1
1,533,245	+		IAI47_07245	0.40	-1.6
1,533,308	+		IAI47_07245	0.60	+0.1
1,533,308	+		IAI47_07245	0.60	-0.7
1,533,309	-		IAI47_07245	0.60	-1.9
1,533,309	-		IAI47_07245	0.60	+1.5
1,533,315	+		IAI47_07245	0.62	-1.9
1,533,315	+		IAI47_07245	0.62	+0.3
1,533,316	-		IAI47_07245	0.63	+1.5
1,533,316	-		IAI47_07245	0.63	-1.6
1,533,337	+		IAI47_07245	0.69	+0.4
1,533,337	+		IAI47_07245	0.69	-1.3
1,533,337	+		IAI47_07245	0.69	-0.1
1,533,337	+		IAI47_07245	0.69	-1.1
1,533,337	+		IAI47_07245	0.69	-0.5
1,533,338	-		IAI47_07245	0.70	+0.2
1,533,338	-		IAI47_07245	0.70	+2.4
1,533,338	-		IAI47_07245	0.70	-0.7
1,533,338	-		IAI47_07245	0.70	+0.7
1,533,338	-		IAI47_07245	0.70	+0.7
1,533,338	-		IAI47_07245	0.70	-0.3
1,533,338	-		IAI47_07245	0.70	+0.4
1,533,338	-		IAI47_07245	0.70	+1.1
1,533,354	+		IAI47_07245	0.75	+4.4
1,533,354	+		IAI47_07245	0.75	-0.9
1,533,354	+		IAI47_07245	0.75	+2.8
1,533,354	+		IAI47_07245	0.75	-1.6
1,533,354	+		IAI47_07245	0.75	+0.6
1,533,354	+		IAI47_07245	0.75	-0.2
1,533,355	-		IAI47_07245	0.75	+1.7
1,533,355	-		IAI47_07245	0.75	+0.3
1,533,396	+		IAI47_07245	0.88	-0.5
1,533,409	-				-2.2
1,533,409	-				+1.7
1,533,431	+				-0.7
1,533,431	+				+0.7
1,533,441	+				+1.3
1,533,441	+				+0.8
1,533,441	+				-2.1
1,533,442	-				-2.3
1,533,442	-				+0.0
1,533,442	-				+1.6
1,533,445	+				-0.0
1,533,445	+				-0.7
1,533,445	+				-2.6
1,533,445	+				+0.1
1,533,446	-				-0.6
1,533,446	-				+0.9
1,533,446	-				-0.7
1,533,446	-				-0.8
1,533,446	-				-0.9
1,533,446	-				-1.3
1,533,446	-				-0.3
1,533,497	-				-0.3
1,533,512	+				+2.3
1,533,534	+				+0.2
1,533,535	-				-0.7
1,533,561	+				+0.1
1,533,562	-				+2.3
1,533,562	-				+0.3
1,533,573	+				-2.2
1,533,594	+				-1.1
1,533,594	+				-0.6
1,533,594	+				+0.9
1,533,594	+				+0.0
1,533,632	+				-3.2
1,533,632	+				-1.2
1,533,632	+				+0.8
1,533,632	+				+0.1
1,533,633	-				-0.7
1,533,633	-				+0.6
1,533,642	+				-2.8
1,533,649	+				-1.1
1,533,649	+				-1.2
1,533,649	+				-0.8
1,533,650	-				-2.1
1,533,650	-				+1.3
1,533,650	-				+1.8
1,533,673	-				+0.6
1,533,689	-				-1.1
1,533,689	-				-2.3
1,533,748	-		IAI47_07250	0.43	+0.8
1,533,748	-		IAI47_07250	0.43	+2.1
1,533,748	-		IAI47_07250	0.43	-1.6
1,533,748	-		IAI47_07250	0.43	+0.1
1,533,748	-		IAI47_07250	0.43	+0.1
1,533,748	-		IAI47_07250	0.43	-0.9
1,533,748	-		IAI47_07250	0.43	-1.6
1,533,810	+				+1.3
1,533,810	+				-1.2
1,533,810	+				-0.2
1,533,810	+				-1.1
1,533,810	+				-2.6
1,533,810	+				-1.3
1,533,810	+				-1.1
1,533,814	-				+1.2
1,533,814	-				-0.9
1,533,872	+				-0.6
1,533,873	-				+0.9
1,533,892	+				-2.4
1,533,892	+				-3.3
1,533,892	+				+0.1
1,533,893	-				-1.7
1,533,893	-				-0.2
1,533,893	-				-1.6
1,533,905	+				+0.8
1,533,905	+				-0.0
1,533,905	+				-1.7
1,533,905	+				+0.7
1,533,905	+				-1.7
1,533,905	+				+1.8
1,533,906	-				-0.1
1,533,906	-				-1.3
1,533,906	-				+1.0
1,533,906	-				+0.8
1,533,906	-				+2.4
1,533,906	-				-0.1
1,533,906	-				+1.8
1,533,961	-				+0.6
1,534,030	-				+2.0
1,534,050	-				+0.2
1,534,110	-				-0.5
1,534,159	+				-0.1
1,534,161	+				+0.0
1,534,353	+		IAI47_07255	0.20	-0.1
1,534,354	-		IAI47_07255	0.21	-0.7
1,534,354	-		IAI47_07255	0.21	-1.5
1,534,365	+		IAI47_07255	0.22	+0.3
1,534,377	+		IAI47_07255	0.23	-2.3
1,534,377	+		IAI47_07255	0.23	+0.1
1,534,378	-		IAI47_07255	0.23	-2.7
1,534,401	-		IAI47_07255	0.25	-2.7
1,534,421	-		IAI47_07255	0.27	+0.7
1,534,421	-		IAI47_07255	0.27	-0.1
1,534,421	-		IAI47_07255	0.27	+0.6
1,534,516	+		IAI47_07255	0.35	-0.5
1,534,516	+		IAI47_07255	0.35	-2.3
1,534,516	+		IAI47_07255	0.35	+1.8
1,534,516	+		IAI47_07255	0.35	-0.3
1,534,516	+		IAI47_07255	0.35	+0.3
1,534,516	+		IAI47_07255	0.35	-3.7
1,534,516	+		IAI47_07255	0.35	-0.5
1,534,516	+		IAI47_07255	0.35	+1.0
1,534,516	+		IAI47_07255	0.35	-1.3
1,534,517	-		IAI47_07255	0.35	-0.2
1,534,517	-		IAI47_07255	0.35	+0.9
1,534,517	-		IAI47_07255	0.35	+0.2
1,534,517	-		IAI47_07255	0.35	+0.3
1,534,517	-		IAI47_07255	0.35	+0.5
1,534,518	+		IAI47_07255	0.35	-1.5
1,534,591	+		IAI47_07255	0.42	-1.6
1,534,612	+		IAI47_07255	0.44	-1.6
1,534,612	+		IAI47_07255	0.44	-0.5
1,534,613	-		IAI47_07255	0.44	+0.8
1,534,613	-		IAI47_07255	0.44	-1.0
1,534,707	+		IAI47_07255	0.52	+1.7
1,534,708	-		IAI47_07255	0.52	+0.7
1,534,708	-		IAI47_07255	0.52	+1.4
1,534,717	+		IAI47_07255	0.53	+1.0
1,534,717	+		IAI47_07255	0.53	-0.3
1,534,718	-		IAI47_07255	0.53	-1.7
1,534,718	-		IAI47_07255	0.53	-1.7
1,534,718	-		IAI47_07255	0.53	-4.1
1,534,806	-		IAI47_07255	0.61	+1.3
1,534,915	+		IAI47_07255	0.71	+2.8
1,534,915	+		IAI47_07255	0.71	-0.9
1,534,915	+		IAI47_07255	0.71	-0.3
1,534,916	-		IAI47_07255	0.71	+0.9
1,534,916	-		IAI47_07255	0.71	-0.6
1,534,916	-		IAI47_07255	0.71	+0.3
1,534,916	-		IAI47_07255	0.71	-0.1
1,534,948	+		IAI47_07255	0.74	-0.6
1,534,948	+		IAI47_07255	0.74	+0.3
1,534,948	+		IAI47_07255	0.74	-0.1
1,534,949	-		IAI47_07255	0.74	-1.0
1,534,951	-		IAI47_07255	0.74	-2.1
1,534,951	-		IAI47_07255	0.74	+0.3
1,534,981	+		IAI47_07255	0.76	-0.3
1,534,981	+		IAI47_07255	0.76	-1.7
1,534,982	-		IAI47_07255	0.77	+1.3
1,534,982	-		IAI47_07255	0.77	+1.0
1,534,982	-		IAI47_07255	0.77	-1.9
1,535,051	-		IAI47_07255	0.83	-2.5
1,535,091	+		IAI47_07255	0.86	+0.4
1,535,091	+		IAI47_07255	0.86	+0.7
1,535,091	+		IAI47_07255	0.86	-1.6
1,535,133	+				-0.7
1,535,134	-				+2.8
1,535,242	+				+0.2
1,535,242	+				-0.8
1,535,242	+				+0.5
1,535,242	+				-0.9
1,535,242	+				-3.0
1,535,242	+				-0.5
1,535,242	+				-1.4
1,535,242	+				+0.6
1,535,242	+				-0.8
1,535,242	+				+2.7
1,535,242	+				-1.6
1,535,242	+				+3.5
1,535,242	+				+1.6
1,535,242	+				-0.6
1,535,242	+				-0.7
1,535,242	+				+1.4
1,535,243	-				-0.1
1,535,243	-				-1.7
1,535,243	-				+0.2
1,535,247	+				+1.2
1,535,247	+				+1.0
1,535,247	+				-2.1
1,535,248	-				+0.8
1,535,330	+				-0.6
1,535,330	+				+0.8
1,535,330	+				-0.6
1,535,376	+				-1.6
1,535,376	+				-0.5
1,535,377	-				+0.4
1,535,377	-				+2.0
1,535,377	-				+1.2
1,535,377	-				+0.9
1,535,437	+		IAI47_07260	0.13	+0.7
1,535,437	+		IAI47_07260	0.13	-1.9
1,535,437	+		IAI47_07260	0.13	-0.3
1,535,437	+		IAI47_07260	0.13	+0.2
1,535,438	-		IAI47_07260	0.13	-0.8
1,535,438	-		IAI47_07260	0.13	-0.5
1,535,439	+		IAI47_07260	0.13	-0.4
1,535,439	+		IAI47_07260	0.13	+0.3
1,535,439	+		IAI47_07260	0.13	-2.7
1,535,440	-		IAI47_07260	0.13	+1.1
1,535,440	-		IAI47_07260	0.13	+1.8
1,535,440	-		IAI47_07260	0.13	-1.3
1,535,440	-		IAI47_07260	0.13	+2.2
1,535,440	-		IAI47_07260	0.13	+1.6
1,535,512	-		IAI47_07260	0.22	-1.2
1,535,512	-		IAI47_07260	0.22	+1.7
1,535,512	-		IAI47_07260	0.22	+0.1
1,535,512	-		IAI47_07260	0.22	-0.0
1,535,512	-		IAI47_07260	0.22	-0.5
1,535,512	-		IAI47_07260	0.22	+0.8
1,535,515	+		IAI47_07260	0.22	-1.1
1,535,515	+		IAI47_07260	0.22	-1.9
1,535,515	+		IAI47_07260	0.22	+0.2
1,535,515	+		IAI47_07260	0.22	-0.3
1,535,515	+		IAI47_07260	0.22	-0.8
1,535,515	+		IAI47_07260	0.22	+2.4
1,535,516	-		IAI47_07260	0.22	-0.6
1,535,516	-		IAI47_07260	0.22	-0.3
1,535,516	-		IAI47_07260	0.22	-0.8
1,535,517	+		IAI47_07260	0.22	-1.0
1,535,517	+		IAI47_07260	0.22	-0.0
1,535,517	+		IAI47_07260	0.22	-1.6
1,535,517	+		IAI47_07260	0.22	+1.6
1,535,517	+		IAI47_07260	0.22	-1.6
1,535,517	+		IAI47_07260	0.22	-0.8
1,535,517	+		IAI47_07260	0.22	+0.2
1,535,517	+		IAI47_07260	0.22	+0.1
1,535,517	+		IAI47_07260	0.22	+0.1
1,535,517	+		IAI47_07260	0.22	-1.9
1,535,517	+		IAI47_07260	0.22	-0.5
1,535,517	+		IAI47_07260	0.22	+3.1
1,535,517	+		IAI47_07260	0.22	+1.0
1,535,517	+		IAI47_07260	0.22	-1.3
1,535,518	-		IAI47_07260	0.22	-0.8
1,535,518	-		IAI47_07260	0.22	-1.1
1,535,518	-		IAI47_07260	0.22	+0.5
1,535,518	-		IAI47_07260	0.22	+0.3
1,535,518	-		IAI47_07260	0.22	-2.0
1,535,518	-		IAI47_07260	0.22	-0.8
1,535,518	-		IAI47_07260	0.22	+0.0
1,535,518	-		IAI47_07260	0.22	+0.5
1,535,518	-		IAI47_07260	0.22	-0.4
1,535,518	-		IAI47_07260	0.22	-0.3
1,535,518	-		IAI47_07260	0.22	+0.0
1,535,518	-		IAI47_07260	0.22	+1.1
1,535,518	-		IAI47_07260	0.22	+2.7
1,535,580	+		IAI47_07260	0.30	-1.2
1,535,580	+		IAI47_07260	0.30	-0.6
1,535,581	-		IAI47_07260	0.30	-1.8
1,535,581	-		IAI47_07260	0.30	+1.1
1,535,608	+		IAI47_07260	0.33	-1.8
1,535,609	-		IAI47_07260	0.33	+0.2
1,535,648	+		IAI47_07260	0.38	-1.1
1,535,648	+		IAI47_07260	0.38	-0.3
1,535,648	+		IAI47_07260	0.38	+1.1
1,535,648	+		IAI47_07260	0.38	-0.9
1,535,648	+		IAI47_07260	0.38	-0.8
1,535,649	-		IAI47_07260	0.38	+2.0
1,535,649	-		IAI47_07260	0.38	+0.4
1,535,649	-		IAI47_07260	0.38	+0.0
1,535,649	-		IAI47_07260	0.38	-0.1
1,535,649	-		IAI47_07260	0.38	-1.9
1,535,649	-		IAI47_07260	0.38	-1.1
1,535,649	-		IAI47_07260	0.38	-0.9
1,535,673	+		IAI47_07260	0.41	-0.3
1,535,673	+		IAI47_07260	0.41	+0.1
1,535,676	+		IAI47_07260	0.41	+0.1
1,535,676	+		IAI47_07260	0.41	+4.0
1,535,676	+		IAI47_07260	0.41	-1.8
1,535,677	-		IAI47_07260	0.41	+1.8
1,535,677	-		IAI47_07260	0.41	-2.0
1,535,677	-		IAI47_07260	0.41	-0.8
1,535,721	+		IAI47_07260	0.47	+0.3
1,535,721	+		IAI47_07260	0.47	+1.0
1,535,722	-		IAI47_07260	0.47	-1.1
1,535,722	-		IAI47_07260	0.47	-0.2
1,535,722	-		IAI47_07260	0.47	-1.1
1,535,722	-		IAI47_07260	0.47	+0.8
1,535,722	-		IAI47_07260	0.47	+1.7
1,535,755	-		IAI47_07260	0.51	-1.1
1,535,755	-		IAI47_07260	0.51	-0.7
1,535,755	-		IAI47_07260	0.51	+0.7
1,535,776	+		IAI47_07260	0.53	+0.7
1,535,776	+		IAI47_07260	0.53	-0.3
1,535,777	-		IAI47_07260	0.53	+0.2
1,535,828	-		IAI47_07260	0.60	+3.2
1,535,848	+		IAI47_07260	0.62	-0.3
1,535,849	-		IAI47_07260	0.62	-2.0
1,535,890	-		IAI47_07260	0.67	-0.1
1,535,890	-		IAI47_07260	0.67	+0.8
1,535,949	+		IAI47_07260	0.74	-0.6
1,535,977	-		IAI47_07260	0.77	-0.2
1,535,996	-		IAI47_07260	0.80	-2.5
1,535,996	-		IAI47_07260	0.80	-1.6
1,536,052	+		IAI47_07260	0.87	-1.0
1,536,052	+		IAI47_07260	0.87	-1.8
1,536,052	+		IAI47_07260	0.87	-1.1
1,536,052	+		IAI47_07260	0.87	-0.3
1,536,053	-		IAI47_07260	0.87	-0.1
1,536,053	-		IAI47_07260	0.87	-0.8
1,536,126	+				+0.2
1,536,163	+				-0.2
1,536,163	+				+2.6
1,536,163	+				+0.0
1,536,163	+				-0.3
1,536,163	+				+0.4
1,536,164	-				-2.2
1,536,164	-				+0.1
1,536,164	-				+1.1
1,536,164	-				-1.3
1,536,164	-				-0.8
1,536,164	-				+0.9
1,536,198	+				+0.5
1,536,198	+				-1.9
1,536,198	+				-1.3
1,536,198	+				-0.3
1,536,198	+				-1.9
1,536,199	-				+1.3
1,536,199	-				+0.8