Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3475 and Dsui_3476 are separated by 11 nucleotides Dsui_3476 and Dsui_3477 are separated by 15 nucleotides
Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301
_3475
Dsui_3476: Dsui_3476 - chemotaxis signal transduction protein, at 3,740,313 to 3,740,831
_3476
Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106
_3477
Position (kb)
3740
3741 Strain fitness (log2 ratio)
-2
-1
0
1 at 3739.355 kb on - strand, within Dsui_3475 at 3739.366 kb on - strand, within Dsui_3475 at 3739.514 kb on + strand, within Dsui_3475 at 3739.543 kb on - strand, within Dsui_3475 at 3739.582 kb on + strand at 3739.671 kb on + strand, within Dsui_3475 at 3739.683 kb on + strand, within Dsui_3475 at 3739.847 kb on - strand, within Dsui_3475 at 3740.005 kb on - strand at 3740.007 kb on + strand, within Dsui_3475 at 3740.303 kb on - strand at 3740.345 kb on - strand at 3740.367 kb on - strand at 3740.382 kb on - strand, within Dsui_3476 at 3740.382 kb on - strand, within Dsui_3476 at 3740.444 kb on + strand, within Dsui_3476 at 3740.485 kb on + strand, within Dsui_3476 at 3740.647 kb on - strand, within Dsui_3476 at 3740.760 kb on + strand at 3740.802 kb on + strand at 3740.810 kb on - strand at 3740.884 kb on + strand at 3740.931 kb on - strand at 3740.934 kb on + strand at 3741.277 kb on + strand, within Dsui_3477 at 3741.282 kb on + strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.405 kb on - strand at 3741.499 kb on + strand at 3741.581 kb on + strand, within Dsui_3477 at 3741.600 kb on + strand, within Dsui_3477 at 3741.719 kb on + strand, within Dsui_3477 at 3741.819 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,739,355 - Dsui_3475 0.56 -0.7 3,739,366 - Dsui_3475 0.57 -2.1 3,739,514 + Dsui_3475 0.64 -0.7 3,739,543 - Dsui_3475 0.65 +0.9 3,739,582 + +0.9 3,739,671 + Dsui_3475 0.71 -1.5 3,739,683 + Dsui_3475 0.72 +0.9 3,739,847 - Dsui_3475 0.79 -0.7 3,740,005 - +0.9 3,740,007 + Dsui_3475 0.86 +0.9 3,740,303 - -1.5 3,740,345 - -0.1 3,740,367 - +0.9 3,740,382 - Dsui_3476 0.13 -0.1 3,740,382 - Dsui_3476 0.13 +0.9 3,740,444 + Dsui_3476 0.25 -0.1 3,740,485 + Dsui_3476 0.33 +0.9 3,740,647 - Dsui_3476 0.64 +0.9 3,740,760 + +0.9 3,740,802 + +0.9 3,740,810 - +0.9 3,740,884 + -1.5 3,740,931 - -1.1 3,740,934 + +0.9 3,741,277 + Dsui_3477 0.34 -1.5 3,741,282 + Dsui_3477 0.35 -2.7 3,741,285 - Dsui_3477 0.35 -0.1 3,741,285 - Dsui_3477 0.35 -1.1 3,741,285 - Dsui_3477 0.35 -1.5 3,741,285 - Dsui_3477 0.35 +0.9 3,741,405 - +0.9 3,741,499 + +0.9 3,741,581 + Dsui_3477 0.58 +0.9 3,741,600 + Dsui_3477 0.60 +0.9 3,741,719 + Dsui_3477 0.69 +0.9 3,741,819 + +0.9
Or see this region's nucleotide sequence