Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3471 and Dsui_3472 are separated by 10 nucleotides Dsui_3472 and Dsui_3473 are separated by 10 nucleotides Dsui_3473 and Dsui_3474 overlap by 4 nucleotides
Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151
_3471
Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530
_3472
Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855
_3473
Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071
_3474
Position (kb)
3735
3736 Strain fitness (log2 ratio)
-1
0
1 at 3734.209 kb on + strand at 3734.279 kb on - strand at 3734.430 kb on + strand at 3734.430 kb on + strand, within Dsui_3471 at 3734.703 kb on - strand at 3734.724 kb on + strand, within Dsui_3471 at 3734.793 kb on + strand at 3734.807 kb on - strand at 3734.840 kb on + strand, within Dsui_3471 at 3735.265 kb on + strand at 3735.274 kb on + strand at 3735.341 kb on - strand at 3735.497 kb on - strand at 3735.532 kb on - strand at 3735.532 kb on - strand at 3735.546 kb on + strand at 3735.578 kb on + strand, within Dsui_3473 at 3735.676 kb on - strand, within Dsui_3473 at 3735.774 kb on - strand at 3735.836 kb on + strand at 3735.900 kb on - strand at 3736.447 kb on + strand, within Dsui_3474 at 3736.529 kb on - strand, within Dsui_3474
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,734,209 + -0.1 3,734,279 - -0.1 3,734,430 + -0.1 3,734,430 + Dsui_3471 0.37 -1.1 3,734,703 - +0.9 3,734,724 + Dsui_3471 0.63 -0.1 3,734,793 + -0.1 3,734,807 - +0.9 3,734,840 + Dsui_3471 0.73 +0.9 3,735,265 + -0.1 3,735,274 + +0.9 3,735,341 - -0.1 3,735,497 - -0.1 3,735,532 - +0.9 3,735,532 - -0.7 3,735,546 + +0.9 3,735,578 + Dsui_3473 0.12 -0.1 3,735,676 - Dsui_3473 0.43 -1.1 3,735,774 - -0.1 3,735,836 + -0.7 3,735,900 - -1.1 3,736,447 + Dsui_3474 0.27 -0.7 3,736,529 - Dsui_3474 0.30 -0.1
Or see this region's nucleotide sequence