Strain Fitness in Dechlorosoma suillum PS around Dsui_3376

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3373 and Dsui_3374 are separated by 20 nucleotidesDsui_3374 and Dsui_3375 are separated by 143 nucleotidesDsui_3375 and Dsui_3376 are separated by 180 nucleotidesDsui_3376 and Dsui_3377 are separated by 186 nucleotides Dsui_3373: Dsui_3373 - Na+/phosphate symporter, at 3,615,423 to 3,617,114 _3373 Dsui_3374: Dsui_3374 - cyclic nucleotide-binding protein, at 3,617,135 to 3,617,500 _3374 Dsui_3375: Dsui_3375 - hypothetical protein, at 3,617,644 to 3,617,820 _3375 Dsui_3376: Dsui_3376 - aspartate/tyrosine/aromatic aminotransferase, at 3,618,001 to 3,619,167 _3376 Dsui_3377: Dsui_3377 - Uncharacterized protein conserved in bacteria (DUF2325), at 3,619,354 to 3,620,076 _3377 Position (kb) 3618 3619 3620Strain fitness (log2 ratio) -2 -1 0 1at 3617.150 kb on - strandat 3617.208 kb on + strand, within Dsui_3374at 3617.208 kb on + strand, within Dsui_3374at 3617.247 kb on - strandat 3617.335 kb on + strand, within Dsui_3374at 3617.354 kb on + strand, within Dsui_3374at 3617.367 kb on + strand, within Dsui_3374at 3617.428 kb on - strandat 3617.531 kb on + strandat 3617.769 kb on - strand, within Dsui_3375at 3618.125 kb on - strand, within Dsui_3376at 3618.187 kb on - strand, within Dsui_3376at 3618.207 kb on + strandat 3618.345 kb on - strand, within Dsui_3376at 3618.358 kb on + strandat 3618.382 kb on + strandat 3618.384 kb on + strandat 3618.509 kb on - strand, within Dsui_3376at 3618.724 kb on - strand, within Dsui_3376at 3618.798 kb on - strand, within Dsui_3376at 3618.798 kb on - strand, within Dsui_3376at 3618.882 kb on + strand, within Dsui_3376at 3618.916 kb on + strand, within Dsui_3376at 3618.944 kb on + strandat 3618.984 kb on + strand, within Dsui_3376at 3619.034 kb on - strand, within Dsui_3376at 3619.034 kb on - strand, within Dsui_3376at 3619.065 kb on + strandat 3619.124 kb on + strandat 3619.126 kb on - strandat 3619.132 kb on - strandat 3619.209 kb on - strandat 3619.278 kb on + strandat 3619.489 kb on - strand, within Dsui_3377at 3619.532 kb on - strand, within Dsui_3377at 3619.575 kb on - strand, within Dsui_3377at 3619.633 kb on - strand, within Dsui_3377at 3619.704 kb on - strand, within Dsui_3377at 3619.772 kb on - strandat 3620.082 kb on + strandat 3620.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,617,150 - -2.6
3,617,208 + Dsui_3374 0.20 -1.9
3,617,208 + Dsui_3374 0.20 +0.9
3,617,247 - +0.9
3,617,335 + Dsui_3374 0.55 +0.9
3,617,354 + Dsui_3374 0.60 -2.6
3,617,367 + Dsui_3374 0.63 -0.6
3,617,428 - +0.9
3,617,531 + -0.1
3,617,769 - Dsui_3375 0.71 -1.6
3,618,125 - Dsui_3376 0.11 -0.3
3,618,187 - Dsui_3376 0.16 +0.2
3,618,207 + +0.9
3,618,345 - Dsui_3376 0.29 -0.2
3,618,358 + +0.9
3,618,382 + +0.9
3,618,384 + +0.9
3,618,509 - Dsui_3376 0.44 -0.6
3,618,724 - Dsui_3376 0.62 -0.1
3,618,798 - Dsui_3376 0.68 +1.1
3,618,798 - Dsui_3376 0.68 -0.1
3,618,882 + Dsui_3376 0.75 -0.7
3,618,916 + Dsui_3376 0.78 -0.1
3,618,944 + +0.9
3,618,984 + Dsui_3376 0.84 -1.1
3,619,034 - Dsui_3376 0.89 -0.9
3,619,034 - Dsui_3376 0.89 -1.7
3,619,065 + -1.7
3,619,124 + +0.9
3,619,126 - -1.8
3,619,132 - -1.1
3,619,209 - -0.7
3,619,278 + +0.9
3,619,489 - Dsui_3377 0.19 -0.7
3,619,532 - Dsui_3377 0.25 -1.7
3,619,575 - Dsui_3377 0.31 +0.9
3,619,633 - Dsui_3377 0.39 -0.7
3,619,704 - Dsui_3377 0.48 -1.9
3,619,772 - +0.9
3,620,082 + -2.3
3,620,095 - +0.9

Or see this region's nucleotide sequence